PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.J01913.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 352aa MW: 38840.4 Da PI: 6.6349

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.J01913.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.8	3.2e-51	23	155	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF+P+dee++++yL++kv+++++++ +i evd++ +ePw+Lp k++ +ekewyfF ++d+ky++g r nratk gyWkatgkdke++ + Pahal.J01913.1 23 LPPGFRFNPSDEEIITFYLTPKVQQRSFTC-AAIGEVDLNGAEPWELPGKANMGEKEWYFFYQKDRKYRKGIRMNRATKGGYWKATGKDKEIYGA 116 79************************99.88***********99999************************************98 PP NAM 96 kgel.....vglkktLvfykgrapkgektdWvmheyrle 129 ++ + +g+kktLvfy+grap+g+kt+W+mheyrle Pahal.J01913.1 117 TTGVvlpvlIGMKKTLVFYTGRAPRGKKTSWIMHEYRLE 155 544467778**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-59	16	191	IPR003441	NAC domain
PROSITE profile	PS51005	55.678	23	191	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	24	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MGDQHQQPQP QPQRMHGGGG LDLPPGFRFN PSDEEIITFY LTPKVQQRSF TCAAIGEVDL 60 NGAEPWELPG KANMGEKEWY FFYQKDRKYR KGIRMNRATK GGYWKATGKD KEIYGATTGV 120 VLPVLIGMKK TLVFYTGRAP RGKKTSWIMH EYRLEGDDRL PYPAANSIPT VTMKSSSAFK 180 DKWVVCRVFH KITGIKKEPA SPPYNNAMDD IRIDQSSVHM PLPLEFPVLP DFTMDPAGIN 240 YSTTDVSSSS LPHVIPPGIA GMGVTMLQMN NASLGNSMAV APQMPFYHQT NIGTVDASGF 300 MAALQGVPSL MVSQNDAGMS IDQTNDAEIP SMVPIVPEST TTMDMDSLWE Y*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MGDQHQQPQP QPQRMHGGGG LDLPPGFRFN PSDEEIITFY LTPKVQQRSF TCAAIGEVDL  60
NGAEPWELPG KANMGEKEWY FFYQKDRKYR KGIRMNRATK GGYWKATGKD KEIYGATTGV  120
VLPVLIGMKK TLVFYTGRAP RGKKTSWIMH EYRLEGDDRL PYPAANSIPT VTMKSSSAFK  180
DKWVVCRVFH KITGIKKEPA SPPYNNAMDD IRIDQSSVHM PLPLEFPVLP DFTMDPAGIN  240
YSTTDVSSSS LPHVIPPGIA GMGVTMLQMN NASLGNSMAV APQMPFYHQT NIGTVDASGF  300
MAALQGVPSL MVSQNDAGMS IDQTNDAEIP SMVPIVPEST TTMDMDSLWE Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	1	197	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	1	197	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	1	197	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	1	197	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-45	1	197	7	174	NAC domain-containing protein 19
3swm_B	2e-45	1	197	7	174	NAC domain-containing protein 19
3swm_C	2e-45	1	197	7	174	NAC domain-containing protein 19
3swm_D	2e-45	1	197	7	174	NAC domain-containing protein 19
3swp_A	2e-45	1	197	7	174	NAC domain-containing protein 19
3swp_B	2e-45	1	197	7	174	NAC domain-containing protein 19
3swp_C	2e-45	1	197	7	174	NAC domain-containing protein 19
3swp_D	2e-45	1	197	7	174	NAC domain-containing protein 19
4dul_A	2e-45	1	197	4	171	NAC domain-containing protein 19
4dul_B	2e-45	1	197	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815672.1	0.0	NAC domain-containing protein 87-like
Swissprot	Q9FLJ2	3e-68	NC100_ARATH; NAC domain-containing protein 100
Swissprot	Q9FLR3	2e-68	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A270R5D7	0.0	A0A270R5D7_9POAL; Uncharacterized protein
STRING	Pavir.Eb00898.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	7e-71	NAC domain containing protein 80

Link Out ? help Back to Top
Phytozome	Pahal.J01913.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]