PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01890.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 338aa    MW: 36069.6 Da    PI: 7.0125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.5e-14117168155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P+a   ++++ + a+i+  A++++k+L+
  Pahal.J01890.1 117 QRMTHIAVERNRRKQMNEYLAVLRSLMPPA---YAQRGDQASIVGGAINFVKELE 168
                     79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.37E-14115172No hitNo description
SuperFamilySSF474594.19E-17116183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.809116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13117181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALEAVVLSQ SQQQGSSRRF GCGAMAGGPS NGLFGGAEGA LELSGAGLGS WDAPACSSSM  60
LLREFQEPAG NIPAAAVPPV ESGVSVGQEE ATAVAPVARR KRRRMRTVKN KEEVESQRMT  120
HIAVERNRRK QMNEYLAVLR SLMPPAYAQR GDQASIVGGA INFVKELEQL LQSLEARRQR  180
SAQRPGTGVG GDDAAPFAGF FTFPQYSMRA AAAPEHATAD ATTHRDGGAE AEDASGSKPS  240
AVADVEATMV ESHANLRVLS RRRPRQLLRL VVGLQGHRLT VLHLNMSSAG QMVLYSFSLK  300
VEDDCQLTSV DEIAAATHQI VEMIHQEQGC SLEQHQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199103RKRRR
2117128RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803750.10.0transcription factor bHLH94-like
SwissprotQ9C7T46e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2S3H0E00.0A0A2S3H0E0_9POAL; Uncharacterized protein
STRINGPavir.Bb02386.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]