PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J01717.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 26755.1 Da PI: 6.1821 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 27.6 | 8.2e-09 | 30 | 86 | 74 | 127 |
NAM 74 knratksgyWkatgk.dkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyr 127 +r+t++g+W++ + dk + + + l gl++tL f+ + +g+ktdW+m ey+ Pahal.J01717.1 30 LSRKTHQGRWEEIKSnDKLIAIRigQ--LpvpqyAGLRRTLEFH---HDDGTKTDWIMLEYH 86 57899******887725555555440..356666*********9...78899*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 12.089 | 1 | 110 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-11 | 14 | 108 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-7 | 17 | 86 | IPR003441 | NAC domain |
SMART | SM00614 | 3.2E-9 | 174 | 226 | IPR003656 | Zinc finger, BED-type |
PROSITE profile | PS50808 | 10.367 | 174 | 230 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF57667 | 4.64E-5 | 177 | 226 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEGRVVDSPD LNASVDPWDL PTPRYFTSSL SRKTHQGRWE EIKSNDKLIA IRIGQLPVPQ 60 YAGLRRTLEF HHDDGTKTDW IMLEYHQVDE YNTHDLLLEE SMVFRKVIQI FKDAVKELEM 120 MWNGDDEEEE RYIGEREEEV EACMSTLLRD CLLGEVGQSD QSRVGKRKRT GAPEGGSEVW 180 LYFTKIYTMD PDRVYAVCHS CDRGYKGHSK NGTSHLKRHN MTCSSKHRKV * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807167.1 | 1e-162 | uncharacterized protein LOC112885745 | ||||
TrEMBL | A0A270R566 | 1e-172 | A0A270R566_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J39504.1.p | 1e-118 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15166 | 4 | 11 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J01717.1 |