PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J01623.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HSF | ||||||||
Protein Properties | Length: 354aa MW: 38139.8 Da PI: 5.2305 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 97.5 | 1.3e-30 | 50 | 140 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k++e++ed++++ ++sws+ nsfvv+d++ fa +Lp+ Fkh nf+ F+RQLn+YgF+kv+ ++ weF+h F +g+++ll + Pahal.J01623.1 50 FLAKMFELVEDPATDGVVSWSAARNSFVVWDPHAFAAGLLPRRFKHANFSTFLRQLNTYGFRKVSPDR---------WEFAHADFLAGQHHLLAN 135 9********************999******************************************99.........****************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r++ Pahal.J01623.1 136 IRRRR 140 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.31E-31 | 45 | 139 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.4E-51 | 46 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.0E-33 | 46 | 139 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 5.1E-16 | 50 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-27 | 50 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.1E-16 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.1E-16 | 101 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEHPAAVTVK QEEDDDEVVV VLDAGGRAGA ALAPAPEPWQ SPAASQVPPF LAKMFELVED 60 PATDGVVSWS AARNSFVVWD PHAFAAGLLP RRFKHANFST FLRQLNTYGF RKVSPDRWEF 120 AHADFLAGQH HLLANIRRRR GAAPGGSRTA RTSAAGSGDR EKEELEKLRR DREALVRELA 180 RLRRGQQEAR AQLLDMERRV RGTERRQEQC TAFLARAVGN PGFLDGLLAR RGRAAPVEAG 240 RKRRLLGPPR GAPGAAGRAP LRGDLARAAG AEGEAPPVLA AAAASQVSSS TATATDMIWY 300 ELLGEEQVEI DDEVEELVAA AAAAEAAEPW EEMGDEEVEE LVQQIGCLGS PSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 9e-26 | 47 | 139 | 7 | 110 | Heat shock factor protein 1 |
5hdn_A | 9e-26 | 47 | 139 | 7 | 110 | Heat shock factor protein 1 |
5hdn_B | 9e-26 | 47 | 139 | 7 | 110 | Heat shock factor protein 1 |
5hdn_C | 9e-26 | 47 | 139 | 7 | 110 | Heat shock factor protein 1 |
5hdn_D | 9e-26 | 47 | 139 | 7 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813788.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813789.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813790.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813791.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813792.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813793.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813794.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813795.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813796.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813797.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813798.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813799.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813801.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813802.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813803.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813804.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813805.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813806.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025813807.1 | 1e-172 | putative heat stress transcription factor A-6a | ||||
Swissprot | Q5Z6A4 | 3e-99 | HFA6A_ORYSJ; Putative heat stress transcription factor A-6a | ||||
TrEMBL | A0A2T8JCM1 | 1e-170 | A0A2T8JCM1_9POAL; Uncharacterized protein | ||||
STRING | Si006775m | 1e-154 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 9e-51 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J01623.1 |