PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J01586.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 270aa MW: 27773.2 Da PI: 7.9958 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.9 | 4.7e-40 | 43 | 143 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++p+++r da+ +++yeA+ar+rdP+yG+v++i++lqqq+ +l+ael Pahal.J01586.1 43 PCGACKFLRRKCVSGCIFAPYFDSEQgAGHFAAVHKVFGASNVSKLLLQIPPHKRLDAVVTVCYEAQARLRDPIYGCVSHIFSLQQQVVNLQAEL 137 7***********************9988******************************************************************* PP DUF260 95 allkee 100 +l+ + Pahal.J01586.1 138 TYLQGH 143 998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.339 | 42 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.4E-39 | 43 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MSSSVPGASA GGSGAGGAGG SSGAGAGGGG PCGGGSGGGS GGPCGACKFL RRKCVSGCIF 60 APYFDSEQGA GHFAAVHKVF GASNVSKLLL QIPPHKRLDA VVTVCYEAQA RLRDPIYGCV 120 SHIFSLQQQV VNLQAELTYL QGHLTTMELP TPPPFSGQPQ MPMTAAFSSV SNLPSSSSVP 180 ASVDLSTLFD SQTQSQQWAF QFQQQQILQQ QQLLQQQQYL QMGEGSRRGA SGSGTVDGGD 240 LQALAMELLD RRQRVAVCSP PKPPTPATQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-39 | 39 | 137 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-39 | 39 | 137 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 35 | SGAGAGGGGPCGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094077 | 1e-118 | FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791842.1 | 0.0 | LOB domain-containing protein 30-like | ||||
Swissprot | O22131 | 2e-70 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
TrEMBL | A0A270R4W7 | 0.0 | A0A270R4W7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib02517.1.p | 1e-113 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 3e-59 | LOB domain-containing protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J01586.1 |
Publications ? help Back to Top | |||
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