PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.J01440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 145aa MW: 17214.6 Da PI: 9.1216 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75.2 | 1.3e-23 | 31 | 120 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 kfY++YA + GFsvrk+k +++ ++e+++r+fvCs+eg+r e++ + t+++r++ra tr++C+a+l v+++ +g w+v++++ H+ Pahal.J01440.1 31 KFYDAYALHKGFSVRKDKVSYKPSTKEVIWRRFVCSCEGYRMEKHFEtTDQKRQPRALTRCECNARLDVQRSAsNGIWYVIDFVDVHTEG 120 6****************************************9998776899999*****************999*************865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.6E-22 | 31 | 121 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 145 aa Download sequence Send to blast |
MEANGYVSLE EIEEYNYVAN QTFNTKEDFF KFYDAYALHK GFSVRKDKVS YKPSTKEVIW 60 RRFVCSCEGY RMEKHFETTD QKRQPRALTR CECNARLDVQ RSASNGIWYV IDFVDVHTEG 120 LMILKKRRQW SFGLVGFVHA RLWK* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012700767.1 | 2e-53 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2S3ILD2 | 1e-104 | A0A2S3ILD2_9POAL; Uncharacterized protein | ||||
STRING | Si015159m | 4e-50 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2449 | 9 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07500.1 | 7e-13 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.J01440.1 |