PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J01138.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 430aa MW: 45908.5 Da PI: 8.031 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.5 | 9.3e-11 | 324 | 382 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR +A rs +RK +i+eLe kv++L++e ++L +l +l+ +a l +++ Pahal.J01138.1 324 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSAGLATQN 382 899*********************************************99998887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.6E-18 | 320 | 384 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.852 | 322 | 385 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-9 | 324 | 382 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-11 | 324 | 381 | No hit | No description |
SuperFamily | SSF57959 | 9.14E-12 | 324 | 375 | No hit | No description |
CDD | cd14703 | 4.11E-24 | 325 | 376 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MDEPGAADPG AARHHLSPQL GAQPPVPRSP TPLDLASAAA SGYRRLSPSL RPPAHPQARL 60 PSPYAQIPAP GGGVHHARSL SQPLFFSLDS LPPPPYADLG AAAHAVPPSP PSSSSDPQQQ 120 PPPPLGLPPR KGAHRRSHSD IPFGGFAQLS PPLPPPAPVK REVTVAAEGC RSDGGDDAAL 180 YDLVNAYMDL DGLDPLNSSE DRHDDRDSRA SGTRAGSAAE SSENEAESQS TSVDRKDGGK 240 SRHCRSLSMD SFMGKLNFAA GDESPKLPLP SPGGGLTRSG SGSLEGGAVA LFDMEFANGE 300 FTESEKKKIM ANERLAEIAL TDPKRVKRIL ANRQSAARSK ERKMRYIQEL EHKVQVLQTE 360 ATTLSAQLTM LQRDSAGLAT QNNELKIRLQ AMEQQAQLRD GKVLAIVTLV RVCYKFSSNN 420 EKCFFFFKS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955809 | 0.0 | EU955809.1 Zea mays clone 1547185 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822599.1 | 0.0 | transcription factor RF2a-like | ||||
TrEMBL | A0A270R6V2 | 0.0 | A0A270R6V2_9POAL; Uncharacterized protein | ||||
STRING | Si015823m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6247 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 3e-62 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J01138.1 |