PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.J01099.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 343aa MW: 39899.7 Da PI: 6.8006

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.J01099.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.9	2.7e-55	16	150	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d Pahal.J01099.1 16 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQEkcrlggPGEEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRD 109 69**************************.99**********953655542233677***************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 k+++++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle Pahal.J01099.1 110 KPIYANkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 150 9856777**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-61	7	170	IPR003441	NAC domain
PROSITE profile	PS51005	60.323	16	170	IPR003441	NAC domain
Pfam	PF02365	1.4E-28	17	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MGMSSTQAAQ TPQQLVPPGF RFHPTDEELV DYYLRKKVAS RRIDLNVIKD VDLYKIEPWD 60 LQEKCRLGGP GEEEQNEWYF FSHKDKKYPT GTRTNRATAA GFWKATGRDK PIYANKQRQL 120 VGMRKTLVYY KGRAPNGHKS DWIMHEYRLE TNENGPPQEE GWVVCRVFKK RLPTTRRESD 180 HDAPCWYVDE DEPFMHDLNS PMSRMPPHHA MPQLQEQHLQ MLNNTYKREL KLQFQMPSHH 240 VLNTIPHELE SPPFHSLLVS PDHQTNLHHA HHQHVQLMEH AVDQVTDWRV LDKFVASQLS 300 HDATKGVDYT DEGDIIQVNE KQEVATDYAS TSTSSSQVDP WK*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MGMSSTQAAQ TPQQLVPPGF RFHPTDEELV DYYLRKKVAS RRIDLNVIKD VDLYKIEPWD  60
LQEKCRLGGP GEEEQNEWYF FSHKDKKYPT GTRTNRATAA GFWKATGRDK PIYANKQRQL  120
VGMRKTLVYY KGRAPNGHKS DWIMHEYRLE TNENGPPQEE GWVVCRVFKK RLPTTRRESD  180
HDAPCWYVDE DEPFMHDLNS PMSRMPPHHA MPQLQEQHLQ MLNNTYKREL KLQFQMPSHH  240
VLNTIPHELE SPPFHSLLVS PDHQTNLHHA HHQHVQLMEH AVDQVTDWRV LDKFVASQLS  300
HDATKGVDYT DEGDIIQVNE KQEVATDYAS TSTSSSQVDP WK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-50	1	171	1	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT075091	0.0	KT075091.1 Panicum virgatum secondary wall NAC master switch (SWN7B) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810695.1	0.0	NAC domain-containing protein 105-like
Swissprot	Q9FWX2	1e-109	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2S3HMH8	0.0	A0A2S3HMH8_9POAL; Uncharacterized protein
STRING	Pavir.Da02426.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12102	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	2e-92	Arabidopsis NAC domain containing protein 26

Link Out ? help Back to Top
Phytozome	Pahal.J01099.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]