PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01092.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 521aa    MW: 55545.7 Da    PI: 6.0235
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01092.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS229.81.3e-701585192374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdg..dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilk 92 
                     v+ Lle+A+  +sgd + a+++Larl+++  sp     p+ R+aa++   L + l+       +al p s +s+ +++ +laa+k++ ++sP+++
  Pahal.J01092.1 158 VDELLEAARRADSGDSTGAREILARLNHRlPSPPLvhPPLLRAAAHLRDTLLRLLVT-----PAALpPGSVSSPLDVALKLAAHKALADASPTVQ 247
                     678*************************98555433579*************99998.....44452555566667******************* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                     f+ +t  q +l+a+  ++rvH++D+d++ G+ Wp+L+q+La +        +pps+++T+++sp s +  el+ t+e L++fA+ +g++fef+++
  Pahal.J01092.1 248 FASFTNTQVLLDALGAARRVHVVDLDVGFGARWPPLMQELALQWrrasaqLPPPSIKVTALVSPGSAHPMELRLTHESLTRFAADVGIRFEFDAV 342
                     *****************************************5432346555699***************************************** PP

            GRAS 182 vakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                     v + l+   +   +    gEa+aV+l l   ++         + +++L++vk+l+P +vv+v++ + +++ ++ ++ l+ ++  +a+++sl+a  
  Pahal.J01092.1 343 VFDPLDPSPPVGVSAAApGEAVAVHLPLGSGTFS--------AAPSTLRVVKQLRPAIVVCVDHGCHRGDLPLSHHALNVVRSGAAFLESLDAA- 428
                     999999999888876666**********999997........4567*********************************************988. PP

            GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                     ++ +++ +kvE+ +l+++++ ++             +  W+ ++ +aGF pv+ls+ a++qa++l+r+     g+ ve+++++l l W++ +Lv+
  Pahal.J01092.1 429 GAPADAVAKVEQYILRPRVERLLLSDR---------MPPWQTMFASAGFAPVQLSSAAEAQAECLVRRRTpTPGFLVEKRQAALALRWQQSELVT 514
                     7888999*************9998654.........569*****************************999************************ PP

            GRAS 370 vSaWr 374
                     vSaWr
  Pahal.J01092.1 515 VSAWR 519
                     ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.192131498IPR005202Transcription factor GRAS
PfamPF035144.4E-68158519IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MACEIVKAEP LSILMISALP MSNLHDAGNG KDDDASPPKR LRRSPAPEPT SVLYNRSPSP  60
PTSSSLASSS APEPPPISAE DWEAVLSGDM AAPPAPARSQ DSCFLHWIMD DDAQVDAFDP  120
FLAPPLCQEP AVEPPFMLQP QPQPPLRVAE DLEPQAVVDE LLEAARRADS GDSTGAREIL  180
ARLNHRLPSP PLVHPPLLRA AAHLRDTLLR LLVTPAALPP GSVSSPLDVA LKLAAHKALA  240
DASPTVQFAS FTNTQVLLDA LGAARRVHVV DLDVGFGARW PPLMQELALQ WRRASAQLPP  300
PSIKVTALVS PGSAHPMELR LTHESLTRFA ADVGIRFEFD AVVFDPLDPS PPVGVSAAAP  360
GEAVAVHLPL GSGTFSAAPS TLRVVKQLRP AIVVCVDHGC HRGDLPLSHH ALNVVRSGAA  420
FLESLDAAGA PADAVAKVEQ YILRPRVERL LLSDRMPPWQ TMFASAGFAP VQLSSAAEAQ  480
AECLVRRRTP TPGFLVEKRQ AALALRWQQS ELVTVSAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2419951942375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810594.10.0scarecrow-like protein 6
TrEMBLA0A2S3HMR90.0A0A2S3HMR9_9POAL; Uncharacterized protein
STRINGPavir.Db02461.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-65GRAS family protein