PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J01086.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 313aa MW: 34714.1 Da PI: 7.0574 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.4 | 7e-13 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +++g +t q++s+ qky Pahal.J01086.2 59 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 103 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.99E-16 | 53 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.628 | 54 | 108 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-18 | 57 | 106 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.3E-6 | 58 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-10 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-10 | 59 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.26E-8 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MVSMSTTPHP LDSTAAPGKE EARPMRLRQV AAPMALPLGD DEDEGPRRVR KPYTITKSRE 60 SWTEPEHDKF LEALQLFDRD WKKIEAYVGS KTVIQIRSHA QKYFLKVQKN GTGEHLPPPR 120 PKRKAAHPYP HKASKKALQV VLPQQASHIM EQGCGTSMDT ATVATDLSAN DALPSWENDP 180 VQHLSPRHTQ GSGATNNYSS SIGSQSGTWP TSEATEQDIM LPALRAMPDF ARVYSFLGSI 240 FDPETNGHLQ QLKEMDPIDA ETVRLLMKNL SINLTSPNFE EHMRLLSSHG SSTDQDMGSS 300 HTIHLPFMIT SK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812176.1 | 0.0 | protein REVEILLE 6-like isoform X2 | ||||
Swissprot | Q8H0W3 | 6e-91 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A2S3HMI1 | 0.0 | A0A2S3HMI1_9POAL; Uncharacterized protein | ||||
STRING | Si006883m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 7e-79 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J01086.2 |
Publications ? help Back to Top | |||
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