PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01086.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 316aa    MW: 35001.4 Da    PI: 6.8979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01086.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.1e-1359103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
   Pahal.J01086.1  59 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 103
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.07E-1653109IPR009057Homeodomain-like
PROSITE profilePS5129414.62854108IPR017930Myb domain
TIGRFAMsTIGR015571.1E-1857106IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.4E-65899IPR009057Homeodomain-like
SMARTSM007172.7E-1058106IPR001005SANT/Myb domain
PfamPF002491.2E-1059103IPR001005SANT/Myb domain
CDDcd001677.41E-861104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVSMSTTPHP LDSTAAPGKE EARPMRLRQV AAPMALPLGD DEDEGPRRVR KPYTITKSRE  60
SWTEPEHDKF LEALQLFDRD WKKIEAYVGS KTVIQIRSHA QKYFLKVQKN GTGEHLPPPR  120
PKRKAAHPYP HKASKKALQV VLPQQASHIM EQGCGTSMDT ATVATDLSAN DALPSWENDP  180
VQHLSPRHTQ DATGSGATNN YSSSIGSQSG TWPTSEATEQ DIMLPALRAM PDFARVYSFL  240
GSIFDPETNG HLQQLKEMDP IDAETVRLLM KNLSINLTSP NFEEHMRLLS SHGSSTDQDM  300
GSSHTIHLPF MITSK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812175.10.0protein REVEILLE 6-like isoform X1
SwissprotQ8H0W33e-89RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2S3HMI10.0A0A2S3HMI1_9POAL; Uncharacterized protein
STRINGSi006883m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.18e-78MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]