PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J01057.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 252aa MW: 26512.8 Da PI: 4.458 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.7 | 1.5e-09 | 4 | 28 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 + W++Ia +++ gRt++++k++w+++l Pahal.J01057.2 4 R-WSSIATKLP-GRTDNEIKNYWNTHL 28 5.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.918 | 1 | 32 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-14 | 3 | 29 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.87E-8 | 3 | 35 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.17E-8 | 3 | 28 | No hit | No description |
Pfam | PF00249 | 2.2E-7 | 4 | 28 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MYNRWSSIAT KLPGRTDNEI KNYWNTHLRK KLLSMGIDPV THRPRTDLNL LAGIPNLLAA 60 AQTATCWDIN ALRLQADAAK YQLLQGLLRA LATPPAAPSV DLMALLAATN GGVSVSQPAG 120 VDQQGTRSAQ YDGLLNLPAL TSVPAATLPA MSSFSGLLSS FGAGDGLSST ELGHSGASGS 180 NMTAAMAPPL VAAKECNDGG TSTPCEDTPA SSPFEGLENL NLDDEFSSDS WKDLLEQMSW 240 LNNPNDQQQL M* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF057260 | 3e-70 | EF057260.1 Panicum virgatum microsatellite PVSSR146 and microsatellite PVSSR147 sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811879.1 | 1e-177 | transcription factor MYB93-like | ||||
TrEMBL | A0A2S3HMF9 | 0.0 | A0A2S3HMF9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J23197.1.p | 1e-136 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 8e-30 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J01057.2 |