PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.J00810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 21411.4 Da PI: 7.3446 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.4 | 2.8e-11 | 11 | 49 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ien + t+ +Rr g+ KK + L +LC++e+++i f + Pahal.J00810.1 11 IENPKR-RATYKNRRDGLVKKTSQLATLCGVEALLICFDP 49 677655.579**************************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.3E-9 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.358 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.76E-16 | 3 | 50 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-14 | 3 | 88 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-12 | 12 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MPRGKLGMKL IENPKRRATY KNRRDGLVKK TSQLATLCGV EALLICFDPK PADGGGASAV 60 TTWPADREDV LELIKKYRET PEDKVRHSFT AAAYYQEELA KQQRKLRKIE QCGPDKLNLQ 120 DWRLADLSPG DLGALLVTLD ETLRKAQQRI VALGGHVEDD GDVPSATTAM VAAPTPLADY 180 NSFDLAFSVP DAGSM |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A270R7X9 | 1e-141 | A0A270R7X9_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Si039273m | 2e-91 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14351 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G55690.1 | 8e-15 | M-type_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.J00810.1 |