PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00688.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 220aa    MW: 22971 Da    PI: 9.4714
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00688.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001888110123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cgk F ++  L  H  +H
  Pahal.J00688.1  88 FRCSVCGKQFASHQALGGHKASH 110
                     89************999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-1187112IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.80188115IPR007087Zinc finger, C2H2
SuperFamilySSF576674.23E-688154No hitNo description
Gene3DG3DSA:3.30.160.606.1E-488111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.009788110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
PfamPF139122.8E-10131155IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099132154IPR007087Zinc finger, C2H2
SMARTSM003551.1132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MPYVVSSSIL QPDQQSRILT NTPAAAIHRS MAPIAHDDYV SLCLMALAAA GAGGGQAAAA  60
AMATTARRNT TAACWTAAAA QQECELRFRC SVCGKQFASH QALGGHKASH RKPPPPRALL  120
QASSSSGSGG RHRCSVCHRG FATGQALGGH KRCHYWDGLS VSVTASASGS GSSIKDFDLN  180
LMPAARRWGE EEEVQSPLPP KKRRLSPGPS LDLDLSLTI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687311e-56EU968731.1 Zea mays clone 323782 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797772.11e-136zinc finger protein 36-like
SwissprotQ75KE54e-48ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLA0A2S3IQG61e-134A0A2S3IQG6_9POAL; Uncharacterized protein
STRINGBRADI2G49250.15e-68(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.18e-23zinc-finger protein 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]