PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.J00671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 21841.9 Da PI: 7.9313 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93 | 3.5e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ +l++++a+p+ +r+++++sl+yeA r+ +Pv+Gavg++ +++++l+q+ Pahal.J00671.1 2 SCNGCRVLRKGCSEGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRPALFQSLLYEAAGRTINPVHGAVGLLGTGNWHLCQA 96 6*********************9998656778*************************************************************** PP DUF260 91 kaelall 97 +++++l+ Pahal.J00671.1 97 AVDTVLR 103 9998776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.919 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.5E-25 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR 60 PALFQSLLYE AAGRTINPVH GAVGLLGTGN WHLCQAAVDT VLRGGAIGPL PELGGDCGAG 120 AGSGDLYGPA AGKRARGWST FSTAKRVRTA GEAAPPAAEA SCDLGLCLSP GSPPAPGERR 180 APLLRPGTPS MSSDESVTTT TGGDREPVLL NLFP* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP097640 | 1e-160 | FP097640.1 Phyllostachys edulis cDNA clone: bphyem213i10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795340.1 | 1e-152 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 2e-67 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A2S3IPG1 | 1e-151 | A0A2S3IPG1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03080.1.p | 1e-128 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67420.1 | 4e-69 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.J00671.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|