PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J00659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 297aa MW: 31976.8 Da PI: 6.9543 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.5 | 7.2e-42 | 21 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppG+rF Pt+eel+ +yL+++++g++ ++e++i+ vdiy+++P +L++ +++ ++++w+fF++r++++ +g r+ r+t +gyWkatg+ Pahal.J00659.1 21 LPPGYRFYPTEEELLGFYLRHRLAGTRAQVEHFIPVVDIYSYHPAQLQAmagAANVgDKEQWFFFCPRAERELSGGRPARTTPTGYWKATGSPSY 115 79****************************999**************95355222335669********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ ++++g k+t+vfy+grap+g+kt+W m+ey++ Pahal.J00659.1 116 VYSApASRVIGEKRTMVFYEGRAPTGTKTRWKMNEYKA 153 ***988999***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-47 | 18 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.864 | 21 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-22 | 22 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MLLQTRMGSG RSSGSDHDPV LPPGYRFYPT EEELLGFYLR HRLAGTRAQV EHFIPVVDIY 60 SYHPAQLQAM AGAANVGDKE QWFFFCPRAE RELSGGRPAR TTPTGYWKAT GSPSYVYSAP 120 ASRVIGEKRT MVFYEGRAPT GTKTRWKMNE YKAVAADDAP PPAGAPAVRL RNEFSVCRVY 180 TSNGTLRSFD RRPLNPPAGG GLDQAAAHRC QQQEALLVPP PPPPASQMAA VDAVAASNGQ 240 SSEHSHGSPS SSGSLGVVVD GAEDAAAAID WDALIPPVDF LRFSVDDLSH VVWPPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-31 | 7 | 184 | 1 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828030.1 | 0.0 | NAC domain-containing protein 90-like isoform X3 | ||||
Swissprot | Q9FMR3 | 3e-60 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2S3ICK2 | 0.0 | A0A2S3ICK2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha01768.1.p | 1e-138 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 3e-63 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J00659.1 |
Publications ? help Back to Top | |||
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