PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00518.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 437aa    MW: 45208.8 Da    PI: 8.08
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00518.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-09265312455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pahal.J00518.1 265 SHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 312
                     8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17259328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-11259316No hitNo description
PROSITE profilePS5088815.809261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-17261329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6265312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MAHDGFLGGF HDLPWPLSHH AAVASAAGGG PFDALQAHVQ HALMGAGAGA GWEHDAAMGS  60
LVPSRSPSPS SLAAAAGGGA AVEAALMEQL ASRLGVSVPS PPSSRYASCY STPVSSPSKP  120
AAAPFGAPLL GADAERAARL SCLAASGGKL SRAASSQSLR GEPAPAPAQQ LASDGSSSDG  180
PSRKRKAPGG KSKAKDAVTT ATPKSREPEM RAKKCKLSTD AADDEERKLA TGDAGRSNGK  240
GKQIAAEPPK DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPG CSKVTGKAVM  300
LDEIINYVQS LQRQVEFLSM KLSTVNPRLE LDVDSFIPKD ANQPCVPAAS SVPPPPQPVY  360
SLEGSSPALC YATSQGAAVP SVVTCAKSFV TPSTFANHDI PDQSLEGFQN VNSQMGSLWE  420
EDDLQSLVLM GFRGST*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370223e-90BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds.
GenBankBT0636603e-90BT063660.1 Zea mays full-length cDNA clone ZM_BFc0091C03 mRNA, complete cds.
GenBankKJ7268663e-90KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798622.10.0transcription factor BHLH089-like
TrEMBLA0A270R3Z90.0A0A270R3Z9_9POAL; Uncharacterized protein
STRINGPavir.Ha00788.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-56bHLH family protein