PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00204.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 445aa    MW: 47391.6 Da    PI: 8.1859
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00204.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-1577136155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Pahal.J00204.1  77 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEEAAARAYDLAALKYWG 136
                     789******************888855566447*************************98 PP
2AP252.11.6e-16179230155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Pahal.J00204.1 179 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 230
                     89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.51E-1677145IPR016177DNA-binding domain
PfamPF008474.8E-1277136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-1578145IPR001471AP2/ERF domain
SMARTSM003801.5E-2478150IPR001471AP2/ERF domain
PROSITE profilePS5103219.57278144IPR001471AP2/ERF domain
PRINTSPR003673.5E-57990IPR001471AP2/ERF domain
CDDcd000183.86E-23179240No hitNo description
PfamPF008475.8E-12179230IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18179240IPR016177DNA-binding domain
PROSITE profilePS5103218.953180238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-18180239IPR001471AP2/ERF domain
SMARTSM003802.7E-26180244IPR001471AP2/ERF domain
PRINTSPR003673.5E-5220240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
METYSLVKDE LHGRGGGGQG LYCGATPRAA PVAGSGAVKS VKRRKREPSS VVTASNGKEE  60
AGGDKSAGGS NAAKRSSRFR GVSRHRWTGR FEAHLWDKGT WNPTQKKKGK QVYLGAYNEE  120
EAAARAYDLA ALKYWGPSTY TNFPVADYEK ELKVMQNVSK EEYLASIRRK SNGFSRGVSK  180
YRGVARHHHN GRWEARIGRV FGNKYLYLGT YSTQEEAARA YDIAAIEYRG INAVTNFDLS  240
TYIRWLKPAA GAAGDDVGTP TSGARPTLPP PSLCLQAGGL LQHPAGMLQV DFDSLYRGHH  300
LAAAAQRGAS FAGLDDVGSV YAGGPSPTAA GACGRPSPSS STTALSLLLR SSVFQELVAR  360
NAGAAAQQQQ PVPADDDGAA ASDVVDAKVE IEEPLGRPEA EGELGHEMYG GAAGAAEDEA  420
FACSMYDLDD SFARIEQSLW NCLT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13844KSVKRRK
2102110PTQKKKGKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0599891e-77EF059989.1 Brachypodium sylvaticum hypothetical protein (57h21.1), methyl sulfoxide reductase (57h21.2), hypothetical protein (57h21.3), oxidoreductase (57h21.4), auxin efflux carrier (57h21.6), CCR4 associated factor-like protein (57h21.7), ribosomal subunit 8E protein (57h21.8), expressed protein (57h21.9), expressed protein (57h21.10), acid phosphatase (57h21.11), polygalacturonase inhibitor (57h21.12), proteasome (57h21.13), leucine carboxyl methyl transferase (57h21.14), homeobox (57h21.15), serine threonine kinase (57h21.16), hypothetical protein (57h21.17), GTP binding protein (57h21.18), zinc carboxy peptidase (57h21.20), DNA repair protein (57h21.21), coatomer complex subunit (57h21.22), sulfate transporter (57h21.23), hypothetical protein (57h21.24), hypothetical protein (57h21.25), hypothetical protein (57h21.26), acyl-ATP thioesterase (57h21.27), hypothetical protein (57h21.28), hypothetical protein (57h21.29), superoxide dismutase (57h21.30), expressed protein (57h21.31), protein kinase (57h21.32), early nodulin protein (57h21.33), early nodulin protein (57h21.34), hypothetical protein (57h21.36), hypothetical protein (57h21.37), and expressed protein (57h21.38) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813277.10.0ethylene-responsive transcription factor WRI1-like
TrEMBLA0A2S3HLV40.0A0A2S3HLV4_9POAL; Uncharacterized protein
STRINGSi007857m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-84AP2 family protein