PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J00159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | DBB | ||||||||
Protein Properties | Length: 375aa MW: 40348.9 Da PI: 4.8652 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.2 | 2.8e-07 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ e++ C ++ lC+ C +e H H++vpl Pahal.J00159.1 4 QCNACGAAEARVLCCADEAALCAACDEEVHAAnklagkHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 29.3 | 1.8e-09 | 61 | 93 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 +kC+ ++e +fC +++ llC+dC +++H Pahal.J00159.1 61 VPKCDICQEASGYFFCLEDRALLCRDCDVAIHT 93 589****************************93 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.694 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.42E-9 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.6E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.2E-16 | 59 | 106 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.76E-9 | 62 | 106 | No hit | No description |
Pfam | PF00643 | 3.6E-7 | 62 | 93 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.745 | 64 | 106 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MKIQCNACGA AEARVLCCAD EAALCAACDE EVHAANKLAG KHQRVPLLSD ADAVATATPA 60 VPKCDICQEA SGYFFCLEDR ALLCRDCDVA IHTVNSFVSV HQRFLLTGVQ VGLDPADPVP 120 PIAENHVNAV GGLVYQPAKH LPRRNPTVQF SGEGTASVPC KSLINGDYSR QNSVPTVRTE 180 VVDWTMHNGA IQSVESPPKY MSEESPTLQQ SSQATVAFSS QINSDSDRAY NLPFSGGNGT 240 DSLPDWPVDE FFTNSEYGPN FSFAEHGSSK SDNAKLGSAG GSPQCRLAEG FVAEELLGQV 300 PGLVTDEYMS RVPENSWAVP EVPSPPTASG LNWHGNLHFT AYDSTMFVPE ISFLQSSQNQ 360 FAVPSGFKRR RRRY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 367 | 372 | KRRRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811997.1 | 0.0 | B-box zinc finger protein 22-like | ||||
TrEMBL | A0A2S3HM19 | 0.0 | A0A2S3HM19_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07875.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1794 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 2e-54 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J00159.1 |