PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04680.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 272aa    MW: 29151.1 Da    PI: 6.5148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04680.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-1997146255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+++taeeAa a++ a+ +l+g
  Pahal.I04680.1  97 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEEAALAYDGAAFRLRG 146
                     59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.16E-3096156No hitNo description
PROSITE profilePS5103223.31497154IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2297155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-3297155IPR001471AP2/ERF domain
SMARTSM003804.7E-3697160IPR001471AP2/ERF domain
PfamPF008474.8E-1498146IPR001471AP2/ERF domain
PRINTSPR003674.8E-1198109IPR001471AP2/ERF domain
PRINTSPR003674.8E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTTAMEQLVT PLPPIGATEY RDLIQALATP VQAAPVVPFM VDTEQSPAMA VGASCYHLIT  60
PAQVAYYYRI GRRMGPAPRV MKQHYGLAAP AATMAKLYRG VRQRHWGKWV AEIRLPRNRT  120
RLWLGTYDTA EEAALAYDGA AFRLRGDAAR LNFPELRRGG RHLAPPLHPS VDAKLQAVTS  180
APAPASHEPE SAGTKNEPGC CSGSEASTTT TAADGADLSS SSIGSSSLAK AADPLPEMPQ  240
VEFPEAPWDE AGVVALRMYP SQEIDWEAIL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1995154363ATERF1
3gcc_A1e-1995154363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0984947e-87FP098494.1 Phyllostachys edulis cDNA clone: bphyem124a13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796806.10.0ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E42e-50RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2S3IML80.0A0A2S3IML8_9POAL; Uncharacterized protein
STRINGPavir.Ia02495.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.18e-38related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]