PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I04657.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 502aa MW: 58001.8 Da PI: 9.3961

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I04657.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.5	1.7e-16	33	157	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................................tekerrtraet 58 +fYn+YAk++GFsv + +s+ s ++e k fv skeg+ ++ k+ k+r++++ + Pahal.I04657.1 33 EFYNSYAKRIGFSVHTGTSRLSGLTREQRKVLFVYSKEGHGRKMKEGksaaesddinyevgdselennneendnedvkkkkkldGGKRRKREKMH 127 6*******************99999********9998887789**************************9999987888889999 PP FAR1 59 rtgCkaklkvkkekdgkwevtkleleHnHel 89 +t+Cka+++vk+ ++w+v+ + +HnHel Pahal.I04657.1 128 HTNCKARMVVKLI-GDRWHVIFFAPDHNHEL 157 ***********.9*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-14	33	158	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MDLNELPPEF DYDFLDESAI HWANISTKQE VREFYNSYAK RIGFSVHTGT SRLSGLTREQ 60 RKVLFVYSKE GHGRKMKEGK SAAESDDINY EVGDSELENN NEENDNEDVK KKKKLDGGKR 120 RKREKMHHTN CKARMVVKLI GDRWHVIFFA PDHNHELIVK PSLEKFMRSH NGIPRQGKDF 180 IALLHGCNLS TGRIMQLMNE FYESAQLVPY EAMDVGNFRS NIRRTEKYKD MQKTLDYFRE 240 LEHEDVEFFI RLNLMPSTGL RASFGLMSTQ RSEGFNAVLK KYVNSNMSVL HFDVQDFRTD 300 DRDRRRWSKY PIEKHASTMY TKNLFYRFSK EFEKTAEYDV KPEGEFQYVP NNKFVYGYGK 360 WTYLVTAIED EGNGVICCHI MKIMTRLGVK TIPNRFILKT CTQESVPEKE NSNANTHVQA 420 DFIARGLAAE GCVSRETYDL MDSHIKMMCS GLNEIKKRKK PSRQRVRGGV GPTNNPGAGA 480 LSDPVGNPPR SKVKGHKKEK D*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MDLNELPPEF DYDFLDESAI HWANISTKQE VREFYNSYAK RIGFSVHTGT SRLSGLTREQ  60
RKVLFVYSKE GHGRKMKEGK SAAESDDINY EVGDSELENN NEENDNEDVK KKKKLDGGKR  120
RKREKMHHTN CKARMVVKLI GDRWHVIFFA PDHNHELIVK PSLEKFMRSH NGIPRQGKDF  180
IALLHGCNLS TGRIMQLMNE FYESAQLVPY EAMDVGNFRS NIRRTEKYKD MQKTLDYFRE  240
LEHEDVEFFI RLNLMPSTGL RASFGLMSTQ RSEGFNAVLK KYVNSNMSVL HFDVQDFRTD  300
DRDRRRWSKY PIEKHASTMY TKNLFYRFSK EFEKTAEYDV KPEGEFQYVP NNKFVYGYGK  360
WTYLVTAIED EGNGVICCHI MKIMTRLGVK TIPNRFILKT CTQESVPEKE NSNANTHVQA  420
DFIARGLAAE GCVSRETYDL MDSHIKMMCS GLNEIKKRKK PSRQRVRGGV GPTNNPGAGA  480
LSDPVGNPPR SKVKGHKKEK D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	124	RRKREK
2	455	459	KKRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311908.1	4e-83	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_022679997.1	2e-85	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2T7D5A3	1e-175	A0A2T7D5A3_9POAL; Uncharacterized protein
STRING	Pavir.Ea04012.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7287	5	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-13	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.I04657.1