PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I04620.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 967aa MW: 108803 Da PI: 5.0341 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.3 | 3.5e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Pahal.I04620.2 8 GVWKNTEDEILKVAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Pahal.I04620.2 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.44 | 2 | 53 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-17 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-14 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 1.4E-12 | 10 | 70 | No hit | No description |
CDD | cd00167 | 2.16E-11 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 6.11E-21 | 33 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.053 | 54 | 107 | IPR017930 | Myb domain |
CDD | cd11659 | 2.87E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 4.4E-60 | 406 | 657 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 967 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKV AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKQPP PGFYDTVGED RPLEHVQFPT 240 TIDELEGKRR ADIEAQLRKQ DIAKNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP 300 QISDHELEEI AKIGNAGDPG LTEELGEGST ATRTLLASYS QTPKLGMTPL RTPQRTPSGK 360 GDAIMMEAEN LARLRESQTP LLGGDNPDLH PSDFSGVTPR KKEIQTPNPM ATPLASPGPG 420 VTPRIGMTPS RDGHNLGLTP KGTPFRDELC INEAGEMQDD TKLELRRQAE LRRSLRSGFA 480 SIPQPKNEYQ IVMPSITEDE KEEAEEKIEE DMSDRLARER AEEQARQEAL LRKRSKVLQR 540 SLPRPPAASV EIIRQSVIRS GESRSRSSFV PPTSLEQADE LINEELLRLL EHDNAKYPLD 600 ETTQKEKKKG SKRQQNGGSL VPEIDDFEEA ELKEAGSMVE EEIQYLRLAM GHENESFEDF 660 VKAHDACQED LMFFPTKNSY GLASVSGNAD KISALQNEFE IVKKRMDDEA KKASRLEQKI 720 KLLTQGYQVR AGKLWSQVQD TFKQMNTAST EIECFQELQK QEHLAASYRI LNLTKEVNKQ 780 KALERILQSR YGDLLSGFQR IQGQLEEHKR QLKIQEAREA ENRAQEEEVV ARDCAAEEEE 840 KKSRSLEEEG VQTNIATDGE AAGSKGTTED QMDVDNRNVD EEFVGPIPPA PDTEGDNDEV 900 TIQENTSNAQ STDCASTDDG ADKTDPAKPE GQDKADDSMA VDAGPQEEGK DEPATVGASH 960 QHSKVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDTRHRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF458962 | 0.0 | AF458962.1 Zea mays CDC5 protein (CDC5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807046.1 | 0.0 | cell division cycle 5-like protein isoform X3 | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A2S3HEH0 | 0.0 | A0A2S3HEH0_9POAL; Uncharacterized protein | ||||
STRING | Si021096m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I04620.2 |
Publications ? help Back to Top | |||
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