PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I04539.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 376aa MW: 38320.6 Da PI: 9.9952

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I04539.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.6e-39	83	143	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt+GG+lrnvPvGgg+r+nk+ss Pahal.I04539.1 83 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGTLRNVPVGGGCRRNKRSS 143 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-33	73	139	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	86	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.767	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MVFPSVPAYL DPPNWNNQQG QQPRASGGGD APLLPVVPAA ATAAAPDVSG LPSSSSGASA 60 AMAAHARPNS MAERARLARM PQPEPALKCP RCDSTNTKFC YYNNYSLSQP RHFCKACRRY 120 WTRGGTLRNV PVGGGCRRNK RSSKSSATGG GSSSSSKPSS SARQLAGPSS TPSNATGATG 180 AIIPPGLGSF SHHLPFLGSM HQPGPNLGLA FSSGLPPLGM QHMDTVDQFP VASGGGATIG 240 ASLEQWRVQQ QPQQQFPFLT GGILDLPPAS MYQLGLDANR GGGGSAAAAA FTLGQTSAAT 300 ARQEGSMKVE NSKGQDMSLQ RQYMAALRHG SQGVWDGNAG SSGGDGGGNG GSSWPMNIPG 360 FNSSSTGDGN GSGML*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MVFPSVPAYL DPPNWNNQQG QQPRASGGGD APLLPVVPAA ATAAAPDVSG LPSSSSGASA  60
AMAAHARPNS MAERARLARM PQPEPALKCP RCDSTNTKFC YYNNYSLSQP RHFCKACRRY  120
WTRGGTLRNV PVGGGCRRNK RSSKSSATGG GSSSSSKPSS SARQLAGPSS TPSNATGATG  180
AIIPPGLGSF SHHLPFLGSM HQPGPNLGLA FSSGLPPLGM QHMDTVDQFP VASGGGATIG  240
ASLEQWRVQQ QPQQQFPFLT GGILDLPPAS MYQLGLDANR GGGGSAAAAA FTLGQTSAAT  300
ARQEGSMKVE NSKGQDMSLQ RQYMAALRHG SQGVWDGNAG SSGGDGGGNG GSSWPMNIPG  360
FNSSSTGDGN GSGML*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582400	0.0	KC582400.1 Sorghum bicolor dof3 protein (dof3) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791451.1	0.0	dof zinc finger protein DOF5.1-like isoform X2
TrEMBL	A0A2S3IRW0	0.0	A0A2S3IRW0_9POAL; Uncharacterized protein
STRING	Pavir.J14669.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	4e-38	Dof family protein

Link Out ? help Back to Top
Phytozome	Pahal.I04539.1