PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I04510.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 271aa MW: 29180.8 Da PI: 8.2928

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I04510.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00017	157	196	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +R +++ +++ L++l+ + +K + a++L +A +Ik+L+ Pahal.I04510.1 157 KRSQKLGDRITALQQLVSPY-----GKTDTASVLHEAATCIKHLH 196 6889999********999.....9***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.08	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-6	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-9	157	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MWNCSAPHPF LLPYGDDYAR CESSSSPAGA VGLDRILPAE YDLYHSLNLS PSLHGLQTPT 60 LFATNGSGSY LGIGANPIYS GETRPAFSQF SCTQPTAAAH LVRWAAAGET MTGDGSRLRG 120 SKRLKTTTAT ATAQDPHHGL RCNAKPTRNQ SMKAPCKRSQ KLGDRITALQ QLVSPYGKTD 180 TASVLHEAAT CIKHLHEQIQ ILTASYPAIS SASSQQGTRE EEGPTDLRRR GLCLAPLSPD 240 VVQLVVSAEA ALRHRDTADT EDRWRWLATL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	124	RLRGSKRLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792107.1	0.0	uncharacterized protein LOC112873346
TrEMBL	A0A2S3IRV1	0.0	A0A2S3IRV1_9POAL; Uncharacterized protein
STRING	Pavir.J38538.1.p	1e-180	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3758	24	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	8e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.I04510.1