PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I04508.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 190aa MW: 19978.7 Da PI: 7.2852 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0016 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Pahal.I04508.1 50 FECKTCNRQFPSFQALGGHRASH 72 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.97E-8 | 48 | 116 | No hit | No description |
Pfam | PF13912 | 3.2E-13 | 49 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.7E-9 | 93 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.85 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.8 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MAYGKRSRQQ AEEMIWLPEG ADVARFLLLF SGHHQHHASP DPASAPERVF ECKTCNRQFP 60 SFQALGGHRA SHKKPRLADG VDGAAAEPPK PKVHGCSICG LEFAIGQALG GHMRRHRAAD 120 QADGANPGLG LGLSLGSGIG PKDGGKKAAP AAELALDLNA VPELEEEPDR AKLGLSAVEF 180 PVAVVDFLR* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796675.1 | 1e-134 | zinc finger protein ZAT11 | ||||
TrEMBL | A0A2S3IRU7 | 1e-133 | A0A2S3IRU7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CE71 | 1e-133 | A0A2T7CE71_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib01297.1.p | 1e-113 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 5e-27 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I04508.1 |