PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04356.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 413aa    MW: 43753.9 Da    PI: 8.175
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04356.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.7e-10343367227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ktelC+ + r G C+y +rC+FaHg+
  Pahal.I04356.1 343 KTELCNKWER-GACPYDGRCRFAHGM 367
                     9*********.*************95 PP
2zf-CCCH19.51.8e-06379404126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt  C+ fa+   C+yG rC+F H+
  Pahal.I04356.1 379 YKTLACQLFAAASGCPYGHRCHFRHS 404
                     99*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-14340373IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-7341367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-8341372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211341368IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-8343367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-9374404IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7375405IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-4378405IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389378406IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MKGGLRFLSP ARPSRVSSER GDGRGFGSPT WSSPLGTLLD SPSSCVSEGR ACEDGVSGFS  60
SPTWGSPLEK LFNTPSSGVS DDSRVGGNGS GFSSPTWGSP LETLFNSPSS CVSDIRGGGN  120
GSGSGIISTP KQASPLGMMF DSPSSCVSDS RGGGNGSGSV FSTPKHASPL ETLLNSPSSC  180
VSDNRGCGNS SSLRVSKERD GEVQKAEMLL RAITERYNGC FLHLRNATAE LADLRRERIR  240
LGAENLHLSH LLEELVVAEQ SNQASAVALT PSLKPVQAEA ASGCAPKSIS IRSKSFISPK  300
QPLREIQPQR LRVRASPAKE DTGGKEKDDG EVEMEAYGQG ALKTELCNKW ERGACPYDGR  360
CRFAHGMEEL RPVIRHPRYK TLACQLFAAA SGCPYGHRCH FRHSLPSTAE SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-16343404567Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186684e-80AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372674e-80AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149594e-80AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126114e-80CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796553.10.0putative zinc finger CCCH domain-containing protein 21 isoform X2
SwissprotQ10MN81e-117C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A2S3IRB70.0A0A2S3IRB7_9POAL; Uncharacterized protein
STRINGPavir.Ib01411.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-32C3H family protein