PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I04235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TALE | ||||||||
Protein Properties | Length: 592aa MW: 62585.7 Da PI: 6.9904 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.3 | 6.3e-09 | 340 | 377 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Pahal.I04235.1 340 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 377 664459******************************88 PP | |||||||
2 | BELL | 91.4 | 8.6e-30 | 197 | 267 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +elq+ kakL +l+eV++rY++y+eq+++v++sFe vag +a+ Yt+lA+++iS+hFr+L+d +a q+ Pahal.I04235.1 197 AAELQRLKAKLYAMLQEVERRYRRYREQMRAVAGSFEGVAGERAAAAYTRLASRTISKHFRSLRDGVAAQL 267 5799****************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.7E-41 | 136 | 265 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-39 | 142 | 263 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 318 | 381 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-9 | 321 | 385 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.44E-12 | 321 | 382 | No hit | No description |
SuperFamily | SSF46689 | 1.71E-17 | 322 | 389 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-28 | 324 | 387 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.7E-18 | 338 | 377 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MAHDPSLAYA DYFAAAGGVT TLVPEVDAAG EDEGHLYGGM HAHHHGFDMF GARGLVPGAT 60 VVAEAHGKGA ALGDFALGAE HLRLLGHSQQ APLTSLSLHG PAEAASLALH HHQLGGGGAL 120 RQHQPAAWPP QPQQQQGGAW HLRGSRFLRP TQQLLQEFCG LPVEAASKPL MKLGSEDGAG 180 EGSSSSAPSA QIQAMDAAEL QRLKAKLYAM LQEVERRYRR YREQMRAVAG SFEGVAGERA 240 AAAYTRLASR TISKHFRSLR DGVAAQLQAV RRALGEKDAE GGVPGAAGMA KGETTPRLRV 300 LDQCLRQHRA YQAGVLESQP WRPQRGLPER AVSILRAWLF EHFLHPYPSD VDKHILARQT 360 GLSRSQVSNW FINARVRLWK PMVEEMYAEE MKGPQEGACS NANDNDRANP SGGYGASELG 420 QGRGRAEDGG VERKPTRAQL VHDAGSLASV VSIGSGRGAQ NIDFGMMDGG HLDFDAYGDA 480 HAAGAGQGFG GGVSLTLGLQ QHAGDPHGGV NVAFAAAPSS AAAHEFLFMA GGEQQQQQQQ 540 QQMVPGGGIH GHQGHQFGAG MESDDAVAAS HYHHRGISAA TGFQLLHDLA G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 2e-17 | 327 | 385 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-17 | 327 | 385 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957060 | 0.0 | EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793881.1 | 0.0 | homeobox protein BEL1 homolog | ||||
TrEMBL | A0A2S3IP40 | 0.0 | A0A2S3IP40_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia02908.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 2e-79 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I04235.1 |