PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04235.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 592aa    MW: 62585.7 Da    PI: 6.9904
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04235.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.3e-093403771954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Pahal.I04235.1 340 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 377
                     664459******************************88 PP

2BELL91.48.6e-30197267272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +elq+ kakL  +l+eV++rY++y+eq+++v++sFe vag  +a+ Yt+lA+++iS+hFr+L+d +a q+
  Pahal.I04235.1 197 AAELQRLKAKLYAMLQEVERRYRRYREQMRAVAGSFEGVAGERAAAAYTRLASRTISKHFRSLRDGVAAQL 267
                     5799****************************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-41136265IPR006563POX domain
PfamPF075261.3E-39142263IPR006563POX domain
PROSITE profilePS5007112.228318381IPR001356Homeobox domain
SMARTSM003893.0E-9321385IPR001356Homeobox domain
CDDcd000861.44E-12321382No hitNo description
SuperFamilySSF466891.71E-17322389IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-28324387IPR009057Homeodomain-like
PfamPF059207.7E-18338377IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MAHDPSLAYA DYFAAAGGVT TLVPEVDAAG EDEGHLYGGM HAHHHGFDMF GARGLVPGAT  60
VVAEAHGKGA ALGDFALGAE HLRLLGHSQQ APLTSLSLHG PAEAASLALH HHQLGGGGAL  120
RQHQPAAWPP QPQQQQGGAW HLRGSRFLRP TQQLLQEFCG LPVEAASKPL MKLGSEDGAG  180
EGSSSSAPSA QIQAMDAAEL QRLKAKLYAM LQEVERRYRR YREQMRAVAG SFEGVAGERA  240
AAAYTRLASR TISKHFRSLR DGVAAQLQAV RRALGEKDAE GGVPGAAGMA KGETTPRLRV  300
LDQCLRQHRA YQAGVLESQP WRPQRGLPER AVSILRAWLF EHFLHPYPSD VDKHILARQT  360
GLSRSQVSNW FINARVRLWK PMVEEMYAEE MKGPQEGACS NANDNDRANP SGGYGASELG  420
QGRGRAEDGG VERKPTRAQL VHDAGSLASV VSIGSGRGAQ NIDFGMMDGG HLDFDAYGDA  480
HAAGAGQGFG GGVSLTLGLQ QHAGDPHGGV NVAFAAAPSS AAAHEFLFMA GGEQQQQQQQ  540
QQMVPGGGIH GHQGHQFGAG MESDDAVAAS HYHHRGISAA TGFQLLHDLA G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-17327385159Homeobox protein Meis2
5bng_B2e-17327385159Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570600.0EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793881.10.0homeobox protein BEL1 homolog
TrEMBLA0A2S3IP400.0A0A2S3IP40_9POAL; Uncharacterized protein
STRINGPavir.Ia02908.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-79TALE family protein