PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I04078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 204aa MW: 23370.8 Da PI: 6.5162 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.8 | 5.5e-11 | 41 | 93 | 36 | 90 |
FAR1 36 skegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 keg r ++k++ e+++ +r+ r+ C+a++k+ ++ dg ++++++e eHnH la Pahal.I04078.1 41 RKEGIRGPDKRE-ESSKYSRPGIRCMCRACMKIGLK-DGFYYIYEFEPEHNHILA 93 689999999999.99999******************.***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-6 | 41 | 92 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MWDDDRLQAP FTAQPEEDEQ QLHVLAMAAE QGRPRAPLAT RKEGIRGPDK REESSKYSRP 60 GIRCMCRACM KIGLKDGFYY IYEFEPEHNH ILAIAIASQA HHLRSQRTIT EPQLASVEAA 120 KVVLILNKAT FDLMAKEAGG IENIEFTREH MKNKLYSKRM LTINQGDTRG VLEYLEKKIS 180 EQEKFFYCSI QVDEDDLIKL PQL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683537.1 | 5e-69 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1W0W5Z8 | 7e-69 | A0A1W0W5Z8_SORBI; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.Da02291.1.p | 1e-74 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 3e-13 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I04078.1 |