PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04064.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 510aa    MW: 52725.1 Da    PI: 6.7317
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04064.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.3e-16304349555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Pahal.I04064.1 304 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 349
                     *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.6E-18297365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.025299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-19302372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.06E-18304353No hitNo description
PfamPF000101.2E-13304349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MNQCVPSWDL DDPALVAAGG GGLNNHPVPA AGGGHHRGGA APAGTTATAG GAFAPVVVPM  60
ADQYYEVAEL TWEKGNISSH GLLNRPPPSK YHHQPAAPPP SHLQGIGGGG GAAGDRETLE  120
AVVGEAAARS HFLSQPPVHL AHWIEVGVGA AAAAVARPGA DALVPCAARA EEAAEGADAA  180
DASRRKRARV VGEDGLVCAS QGSAAPGRRG DSALITLDGC GTGADDVCGF TTTTNNSTSL  240
EREDKGSPDT ENTSIGGGAS DSRCFSRRSQ RDGLCDEGEN VVTTGDGAVR SSVSTKRSRA  300
AAIHNESERK RRDRINQKMK TLQKLVPNSS KTDKASMLDE VIDYLKQLQA QVQVMSRMST  360
MMMPMAMPQL QMSAVMAQMA QMAQMAQMAQ GMMNMGSLAQ PAAAYAGLTP PMMPTFVPTM  420
PWDPTTSGAG SVVGTGTADR APQPPAAVAG AVPPDAFSAF LACQAQQQSG QVRQQQQQPG  480
SMEAYNKMVA LYQKMSQQQQ GQPSSSSKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307312ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792487.10.0transcription factor UNE10 isoform X1
TrEMBLA0A2T7CA010.0A0A2T7CA01_9POAL; Uncharacterized protein
STRINGPavir.Ia02188.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-31bHLH family protein