PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I04013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 29893.7 Da PI: 7.0074 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.2e-19 | 97 | 147 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k +r++lg+++ta eAa+a+++a+ +l+g Pahal.I04013.1 97 RYRGVRQRP-WGKYAAEIRDP---ArKGARVWLGTYDTAVEAARAYDRAAFRLRG 147 7********.**********8...4445*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.1E-37 | 97 | 161 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-31 | 97 | 156 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.684 | 97 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-23 | 97 | 156 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.19E-28 | 97 | 156 | No hit | No description |
Pfam | PF00847 | 2.4E-13 | 97 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-14 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-14 | 137 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MALLREHLDL IRAHLLDDRH DHDDAVSSED YSASSPSPSP PAGRRPLPAL SVALPPRSAV 60 ALQQQQQLWA APPPPQIIHQ QEQSCYCPEA EEDDFRRYRG VRQRPWGKYA AEIRDPARKG 120 ARVWLGTYDT AVEAARAYDR AAFRLRGSKA ILNFPNEVAF GTAARWGPPP PPAAAPCYPT 180 AASGSKRARS PERALQEQGA GCMVIREVKR ERVQEPAASC GWDGGVAVAP TAASGVADFF 240 WEEEELLKGT ICSLPPLSPL SPYPQLAFPQ VSVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-28 | 96 | 161 | 4 | 69 | ATERF1 |
3gcc_A | 4e-28 | 96 | 161 | 4 | 69 | ATERF1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796155.1 | 0.0 | ethylene-responsive transcription factor ERF105-like | ||||
TrEMBL | A0A2S3INL8 | 0.0 | A0A2S3INL8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib02259.1.p | 1e-131 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 7e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I04013.1 |