PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03958.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family STAT
Protein Properties Length: 709aa    MW: 78635.8 Da    PI: 6.2469
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03958.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT186.33.8e-582293471119
            STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk 94 
                     l+vvl++a+g+pv kd+evv+sL+yad+g+vveks dd+e+pLLi+++G+e+++ +rpl+++rGra+fklkisqLsskcdn+Lfri+f+++++++
  Pahal.I03958.1 229 LEVVLIDAFGEPV-KDKEVVSSLVYADNGMVVEKSrDDSEPPLLITCEGLEYPAISRPLPIIRGRALFKLKISQLSSKCDNKLFRIHFSTLHMRR 322
                     79**********9.*********************9*********************************************************** PP

            STAT  95 ypfleavskpirCisrsrntrsssl 119
                     ypflea+sk irCisr+r+ r++++
  Pahal.I03958.1 323 YPFLEAYSKTIRCISRNRTIRPLGS 347
                     ********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.505.102.9E-5601681IPR000980SH2 domain
SuperFamilySSF555503.32E-7604688IPR000980SH2 domain
PROSITE profilePS5000110.39610708IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MAAPGSECGG SDGGYRDLRD VRVELDPGEA RGGGGGGSAV CFWLYLSSSA RPSSVILHQV  60
TAGDDNKLPF LALGEGNKLL LFPLMRLYKE APATASFYPW TDTTNLSSTN ECPLEKWFHI  120
GCEVTENFMR LHINGDLTAE IHLCSLSGES DHQENANKIS LVGNDGKLEG YMYNIEVSSV  180
LGTIQEQYAK NPPFKLSIDY SSSDGIEECD DGIWNIVGGK ASCRRNFILE VVLIDAFGEP  240
VKDKEVVSSL VYADNGMVVE KSRDDSEPPL LITCEGLEYP AISRPLPIIR GRALFKLKIS  300
QLSSKCDNKL FRIHFSTLHM RRYPFLEAYS KTIRCISRNR TIRPLGSGKR VSSATADETD  360
FLQGLVNADR VNGRLHSHGQ SSVVHFHTPK FPKIEGDGMA KVVDTNKILS QNKHARKMVV  420
SKEPQNAMGT DTSTSNFDSF GSGSSWSGSD VDDVETFSDA VVFRYCLDST YDRSKFLRGA  480
APTFNKEDLV KLADEISLYS GCSHHRNQIL MSKRLLREGA DTWSMISKNN ERALWSSAVP  540
GIITKFMDIA HSVNRGLSEQ DLEVLRGIAG CGEDIGRDEF DRLWYWLYPV AASLSRDKIK  600
KLWDCTSPKW IEGFITMQEA ENALRISKEM LKEPGTFVLR FPTTRSWPHP DAGNLVVTYI  660
GSDNSIHHRL LSLDSSAATA ENLQDLLLQE PELSQSSRVD RLPTAIRR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795117.10.0SH2 domain-containing protein B-like
TrEMBLA0A2S3ING10.0A0A2S3ING1_9POAL; Uncharacterized protein
STRINGPavir.Ia02279.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-152SH2 domain protein B