PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I03861.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 282aa MW: 32210.6 Da PI: 10.2834 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 192 | 240 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rWT E +llv++v ++G g+W+ ++ Rt ++k++w+++l Pahal.I03861.1 192 SRWTGKEVKLLVQGVSKFGVGRWSEMKKKYFktSVRTSVNLKDKWRNLL 240 59***********************9999988967************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.379 | 186 | 244 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.01E-14 | 188 | 269 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-8 | 190 | 242 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 192 | 241 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 193 | 240 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.00E-19 | 193 | 241 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MEQPEIKFCS PEMEQTGLFW APVQQEEQGL DGHLGDLQFS LASGTACELQ GGVQGRGEAG 60 EGAAGVQGDV RRGTVWWPRA RVRASFVRPA RDAAPRSTVQ RGDKLEMENY QAQDDDALFV 120 LQLLEEADLD EWLSGGLHQS PLQDTVSHHK MEGRKSGRRG MRKRRISPWD TFIFGGTTLG 180 RNRKYITRKN NSRWTGKEVK LLVQGVSKFG VGRWSEMKKK YFKTSVRTSV NLKDKWRNLL 240 RAYQENVQKY TLLDLEPPLV EQIRKLAAKH PYPKQRHNWY I* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797447.1 | 1e-140 | uncharacterized protein LOC112877369 | ||||
TrEMBL | A0A3L6TSQ2 | 1e-144 | A0A3L6TSQ2_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia01842.1.p | 1e-125 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5225 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-14 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I03861.1 |