PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03833.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 89aa    MW: 9817.08 Da    PI: 8.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03833.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-0812531454
                    HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
             HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                    d+iN+ +++L++llP++s +  + + s +  L+++++YI+sL
  Pahal.I03833.1 12 DEINELISKLQSLLPESSgRRAASRSSASKLLQETCRYIRSL 53
                    68**************87577777799999**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.826153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-81273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-61253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-91269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSGHRAGRIT DDEINELISK LQSLLPESSG RRAASRSSAS KLLQETCRYI RSLNREADDL  60
SNRLKELMAT MDGDSPQADI IRSLLRSL*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797969.19e-56transcription factor ILI3-like
SwissprotA2XD154e-30ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R474e-30ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A2S3IMH62e-54A0A2S3IMH6_9POAL; Uncharacterized protein
STRINGSi038834m1e-45(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-23bHLH family protein