PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I03820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27304.8 Da PI: 6.1746 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.1 | 1.2e-09 | 20 | 64 | 3 | 52 |
AP2 3 ykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkk 52 y+GV + +g+W+A+I + +g f++gkfgta Aa a+++a ++ Pahal.I03820.1 20 YRGVAMLP-DGKWRAYIV---NrDG--EPFNIGKFGTATAAALAHDRAILA 64 9*******.9******54...4333..*******************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.891 | 19 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-5 | 19 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-10 | 19 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-10 | 19 | 77 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.3E-6 | 20 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MATTKPTATL TPTPAAAFQY RGVAMLPDGK WRAYIVNRDG EPFNIGKFGT ATAAALAHDR 60 AILAVLGPDT SGAVLNFRAA FSDTELRFLS GRHAPARPSG VVAMVRRSDD GSYDTELSRF 120 AARAFDAYLD PDLALDVANF RLAHSDMLHH LMEKAAITAG ANANQETCAK AKLDAEREAF 180 VQTAKNKAID ELWVERYHHH RLATGHTFED ENRWPLVVPV NDVRVDWSPG EELIYLPHGS 240 SYVDEMIL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2S3IMH1 | 0.0 | A0A2S3IMH1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib03513.1.p | 1e-158 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15058 | 17 | 18 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I03820.1 |