PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I03812.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 434aa MW: 45329.8 Da PI: 8.5616

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I03812.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.4e-40	96	155	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ Pahal.I03812.1 96 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKHA 155 78999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	92	153	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-32	97	154	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	100	154	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	102	138	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MVVESTGGGG GDLLIKLFGK TIPVPETAAK ESSGGGSGGS SSSTTESDVP ENAHQDASDP 60 SPQPEVVDAE EPKSSPETQQ HGAGDMAGQR EKLKKPDKVL PCPRCNSMDT KFCYFNNYNV 120 NQPRHFCKNC QRYWTAGGAM RNVPVGAGRR KNKHAVAASQ FLQRVRAALP AAAGDQLKTN 180 GTVLSFGGHG APPALQDLAE QVSHLKEKLL LPARNAGNPS PVGPCSEGFS STDDKAHGGG 240 IKEKPTVDRP ANGAPHPASM NGAAVWPYGC APAPSPAAYF SSGIAIPIYP AAPGYWGCMV 300 PGTWSLPWPV QGVSSPTSAP SLSSSGPEPL TLGKHPREAD EGRSAHGSGK VWAPKTIRID 360 DADEVARSSI WSLIGIKGDK KQDAADHRAA GHKHGTVFEQ KREPKKPAMI ASSPLLHTNP 420 VALTRSVTFQ EGS*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MVVESTGGGG GDLLIKLFGK TIPVPETAAK ESSGGGSGGS SSSTTESDVP ENAHQDASDP  60
SPQPEVVDAE EPKSSPETQQ HGAGDMAGQR EKLKKPDKVL PCPRCNSMDT KFCYFNNYNV  120
NQPRHFCKNC QRYWTAGGAM RNVPVGAGRR KNKHAVAASQ FLQRVRAALP AAAGDQLKTN  180
GTVLSFGGHG APPALQDLAE QVSHLKEKLL LPARNAGNPS PVGPCSEGFS STDDKAHGGG  240
IKEKPTVDRP ANGAPHPASM NGAAVWPYGC APAPSPAAYF SSGIAIPIYP AAPGYWGCMV  300
PGTWSLPWPV QGVSSPTSAP SLSSSGPEPL TLGKHPREAD EGRSAHGSGK VWAPKTIRID  360
DADEVARSSI WSLIGIKGDK KQDAADHRAA GHKHGTVFEQ KREPKKPAMI ASSPLLHTNP  420
VALTRSVTFQ EGS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582399	1e-102	KC582399.1 Sorghum bicolor dof2 protein (dof2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797411.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A2S3IMK7	0.0	A0A2S3IMK7_9POAL; Uncharacterized protein
STRING	Pavir.J12332.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-60	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pahal.I03812.1