PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03780.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 817aa    MW: 91676.7 Da    PI: 7.4119
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03780.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.4e-084275338
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                      WT +E   +++a +++G++ Wk+I++ +g ++++ 
   Pahal.I03780.1 42 TWTNDELMCFYKAYHRHGKD-WKKISAVVG-HKSPD 75
                     5*****************99.*********.88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.7373889IPR017884SANT domain
SuperFamilySSF466893.59E-93885IPR009057Homeodomain-like
SMARTSM007178.9E-43987IPR001005SANT/Myb domain
PfamPF002495.8E-74277IPR001005SANT/Myb domain
CDDcd001674.01E-54274No hitNo description
SMARTSM011359.1E-25496597IPR033471DIRP domain
PfamPF065844.1E-27496594IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MGPVKLSRTI NKIRIKGYED RQQHGDVPSS TKKRKISDLG ATWTNDELMC FYKAYHRHGK  60
DWKKISAVVG HKSPDVVKAL YTLHQTFLSL PKHQATSMGF IALVTGHCNL LELPPSHRGN  120
GRTRASGEAK KHGEATQHKV HEVPYPHDSY HAWIIPGFSP YFKKRYYGGK YLNSQSHSVG  180
NRTPRVPVIV PTDRNAIDDA APELKNAISS TKWNNGKIDN DNANFSMNEC SHDGRSGVME  240
ATKGVECQTF LESKGTGGTE ICQTQQPLKK RRMNQTMNGG RTSKVGHEAM IAVKEGNKPL  300
GLLKEQHMFS AIISADDMFI LDVLESLVNA PDKMSKLKIN IAPDKIESDF TLLESKDEGH  360
SPFDLSKQGK LVYECSASKT KQKKHTELLN AVVPAEKINV AHAIDITEGS SNSDSATGIG  420
DLPESTANIP CEVYPNVPRE INPEISMSRR RKIKNKMHSK KMYVSCNEAS DNVQARKLLH  480
CLSSELLRRW CTHEWFYSAV DFPWFMDNDF AKYLNHPYLR HISRLARSEW SIVRSYRGKP  540
RRFSDNFLEV ERQQLEDYRN GVRACYAQLS DGSLDSLPAD VARPFSIGQV VIVRDPCSRE  600
LCDGKVVAVE QDCCKDIDCM PANWLDNLPD NVRSTLDSHD VHNLLEMEHV SELTPSSNRD  660
HTINEDSIPE LPISLDVTSD QQLEAEYSVD SGRTQKESTS DGVVQSIDFL NHDDHYDQLE  720
SYCSAFVQSL QSQAREMVDK VMQLPSKLIT NCTATVLAVK CLADSRHPPA NIAGVLERFS  780
ALLRPSCSEN LTIYRDIEKH ISLITSQTVA LMPRIL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678605.10.0protein ALWAYS EARLY 1 isoform X1
RefseqXP_022678606.10.0protein ALWAYS EARLY 1 isoform X1
TrEMBLA0A2T7C9C90.0A0A2T7C9C9_9POAL; Uncharacterized protein
STRINGPavir.Ia02710.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.27e-45DNA binding