PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I03696.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 437aa MW: 51467.2 Da PI: 9.5936

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I03696.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.9	2.9e-17	36	115	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ evGF ++k++ ++ ++g t+r+++C ++g+ e+ + k +++tgCka++++ ++kd+ w+++k + eHnH+l+ Pahal.I03696.1 36 DFYNMYSWEVGFGIKKDTLITN-KQGFKTRRDLRCLCSGSGEDAQYK---------TKKTGCKAMIRMLRSKDDGWYISKHVAEHNHPLT 115 6***************9998.77889********9998777.........99****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-14	36	115	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MGPIEIVLRN APYRKTKYIF EPLLGITFDS EIEGYDFYNM YSWEVGFGIK KDTLITNKQG 60 FKTRRDLRCL CSGSGEDAQY KTKKTGCKAM IRMLRSKDDG WYISKHVAEH NHPLTDTCGQ 120 KKEWKSHGNL DPCAADMIKY LRENNVSLTK VHCIMGSMFG SMENIPVTKR SIRAICRQIA 180 KDQMDDDVQK TLDTFRQIRT EDSGFQFSVE LDEQNKIKTL MWINGKSRES PVRKLFHKII 240 NDMLTKDEFE RAWAYMVEHF NLTENEYLAN IYNKRGKWAK AYFRGTFCAR MSSTQRSESA 300 NHMLKRFVPR NCSMNRFVVQ FNKLLFALSR AEVRAEYDTK IFNNVRDRAW PVEKHAMKFY 360 TAAAYELFRK EVSKSTKYFA REKIFNKEYE VVHVKQDKKL PWGREKFSVI VCNEGERYDC 420 ECGLYQHFGM LCSHVIR

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MGPIEIVLRN APYRKTKYIF EPLLGITFDS EIEGYDFYNM YSWEVGFGIK KDTLITNKQG  60
FKTRRDLRCL CSGSGEDAQY KTKKTGCKAM IRMLRSKDDG WYISKHVAEH NHPLTDTCGQ  120
KKEWKSHGNL DPCAADMIKY LRENNVSLTK VHCIMGSMFG SMENIPVTKR SIRAICRQIA  180
KDQMDDDVQK TLDTFRQIRT EDSGFQFSVE LDEQNKIKTL MWINGKSRES PVRKLFHKII  240
NDMLTKDEFE RAWAYMVEHF NLTENEYLAN IYNKRGKWAK AYFRGTFCAR MSSTQRSESA  300
NHMLKRFVPR NCSMNRFVVQ FNKLLFALSR AEVRAEYDTK IFNNVRDRAW PVEKHAMKFY  360
TAAAYELFRK EVSKSTKYFA REKIFNKEYE VVHVKQDKKL PWGREKFSVI VCNEGERYDC  420
ECGLYQHFGM LCSHVIR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-22	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.I03696.1