PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03502.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 394aa    MW: 41587.5 Da    PI: 9.2983
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03502.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_174.31.6e-23324386163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv  L+a N aL++el++lkk ++ l++e+
  Pahal.I03502.1 324 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGALRSELDQLKKACEDLEAEN 386
                     89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.7E-18320384No hitNo description
PfamPF001704.6E-21324386IPR004827Basic-leucine zipper domain
SMARTSM003387.0E-21324388IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.748326389IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.0E-11327382No hitNo description
CDDcd147027.04E-20329379No hitNo description
PROSITE patternPS000360331346IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MCYPLAGRAT YTDTWTLRRA PIYWAWAAFV LVLLRVLVVP AAASAHLPPA CPPRPPPQQP  60
RRSSQTILVV QDRSGRGTRG AWPVMASSAS TTSGDEEGPS APSAGAAPPQ AHAEWAASMQ  120
AYYAAGGQPY AWHAAQGFVH GGGMQQHMMA AAAGAPYGTP MTFHPAYYAH AAMAASVPYT  180
AGEPVAVAEG KCKRKSSGAP SVGSSSGSSD GGSEEKRDAS AEHKLLPSAK RIKSTSANVQ  240
GEPSHAATTQ DAAAGTRSAA KRRPAGKLSV STTETAAISN ARPNLNIGID LWSNSPVKAE  300
TSGQIEINAA APSHDVPLSQ MQDERELKRE RRKQSNRESA RRSRLRKQQE CEELAQKVTD  360
LTAINGALRS ELDQLKKACE DLEAENSELM VSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340346RRSRLRK
2340347RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9770582e-35EU977058.1 Zea mays clone 997640 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792641.11e-172DNA-binding protein EMBP-1-like isoform X2
SwissprotP250329e-55EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A2T8I0151e-177A0A2T8I015_9POAL; Uncharacterized protein
STRINGPavir.J02462.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.12e-27basic region/leucine zipper transcription factor 68