PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03485.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 269aa    MW: 27791.2 Da    PI: 6.3742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03485.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.3e-1176122354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h e+E+rRR+ri+s +++Lr +l  +     +K +Ka+ L kAve +++L
  Pahal.I03485.1  76 RNHREAEKRRRERIKSHLDRLRNVLSCD-----PKIDKASLLAKAVERVRDL 122
                     78***********************997.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.08773122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-876122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-1276129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-1177126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-979128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MFPAAEVSAL AAGAGAAGRQ GEGGVLPMLP PFFMGSIWPA NAAGAGAAGA ADSEEDEAAA  60
AAAAAAAHDR ALAASRNHRE AEKRRRERIK SHLDRLRNVL SCDPKIDKAS LLAKAVERVR  120
DLKQRVAGVG EAAPAHLFPT EHDEIVVLAS GGGAVFEASV CCDDRSDLLP ELIETLRALR  180
LRTLRAEMAT LGGRVRNVLV LARDVDGGGG TGDDDGYGRT DSAGSIESNG GGDFIKEALR  240
ALVERPGAGG GDRPKRRRVS DTNMQAAV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254258KRRRV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279660.0KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795994.10.0transcription factor bHLH106-like
SwissprotO806743e-48BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2S3IHL40.0A0A2S3IHL4_9POAL; Uncharacterized protein
STRINGPavir.J24868.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.19e-28bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]