PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I03417.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C3H

Protein Properties

Length: 647aa MW: 75248.2 Da PI: 10.451

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I03417.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.5e-07	623	645	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++Cr++++ +C+yG+ C F+H+ Pahal.I03417.1 623 RPCRYYYQDRWCPYGEGCWFSHD 645 89********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.720.30	1.5E-6	64	108	IPR003034	SAP domain
SuperFamily	SSF68906	4.58E-5	65	108	No hit	No description
PROSITE profile	PS50103	13.159	619	646	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.8E-6	620	645	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-5	623	645	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	623	645	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence Send to blast
MAAAAAAEPR AGHLPRIGGL GLEVESVLRA RMSRMSISAS AGRGRKGPAV PKLGKEEIDL 60 LAMVDKHKQD GQLERLKVYE CKAYLRMHKL RLTGKKEVLL IRIREHIEVK NDGEEKYPVS 120 SFVLNCKAKH LEKVIIKCKL CWKKGAPREV KGRLCGQRTN AGRIIKESYG TAKQQHTFTI 180 EILCSKGYKP WPPLHLLLIK GRNLYKDKTM RQPWPDEVER NRVIQEKHER GDLARKSRAA 240 RIHEKENKKL LSLNRNRIKD NKIKEQHNMN QKQPQETQQS QNVKSTNILQ QRVSEKKDPS 300 PQNGEPGNTR QQHISSKATT SHHNKVFPQK GATRTFKQEF NGHQISSNQH GGSQLKVLSD 360 PTHTQQMFKD HHHGYQQRNE VLPQEVPMRT SRKAFVDHQA PSQHNGGLGK TNHHQISSKH 420 TPSMLKYPQQ PPKHQNHNEE DGLQKYDDSS FQLQRKFTQH GSNFHQNARG GHQAHQPQRP 480 RNQDENNAYY TPKCNDSSFQ TRGKLTQHAN AYQHGSNSHQ YAQVNHQTLR PRNQDFNSSD 540 QSYGQDYHNQ GYHDYRGITR GQYQPQQSRN QNYYGRRPMT QDQYRTQQNH HQNYNGHRKM 600 NQNQYHPRQN QPLQFLEQQP QLRPCRYYYQ DRWCPYGEGC WFSHDI*

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence Send to blast

MAAAAAAEPR AGHLPRIGGL GLEVESVLRA RMSRMSISAS AGRGRKGPAV PKLGKEEIDL  60
LAMVDKHKQD GQLERLKVYE CKAYLRMHKL RLTGKKEVLL IRIREHIEVK NDGEEKYPVS  120
SFVLNCKAKH LEKVIIKCKL CWKKGAPREV KGRLCGQRTN AGRIIKESYG TAKQQHTFTI  180
EILCSKGYKP WPPLHLLLIK GRNLYKDKTM RQPWPDEVER NRVIQEKHER GDLARKSRAA  240
RIHEKENKKL LSLNRNRIKD NKIKEQHNMN QKQPQETQQS QNVKSTNILQ QRVSEKKDPS  300
PQNGEPGNTR QQHISSKATT SHHNKVFPQK GATRTFKQEF NGHQISSNQH GGSQLKVLSD  360
PTHTQQMFKD HHHGYQQRNE VLPQEVPMRT SRKAFVDHQA PSQHNGGLGK TNHHQISSKH  420
TPSMLKYPQQ PPKHQNHNEE DGLQKYDDSS FQLQRKFTQH GSNFHQNARG GHQAHQPQRP  480
RNQDENNAYY TPKCNDSSFQ TRGKLTQHAN AYQHGSNSHQ YAQVNHQTLR PRNQDFNSSD  540
QSYGQDYHNQ GYHDYRGITR GQYQPQQSRN QNYYGRRPMT QDQYRTQQNH HQNYNGHRKM  600
NQNQYHPRQN QPLQFLEQQP QLRPCRYYYQ DRWCPYGEGC WFSHDI*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004986580.2	0.0	zinc finger CCCH domain-containing protein 62
Swissprot	Q338N2	1e-157	C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBL	A0A2S3IMD2	0.0	A0A2S3IMD2_9POAL; Uncharacterized protein
STRING	Pavir.Ib02799.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13107	20	22

Link Out ? help Back to Top
Phytozome	Pahal.I03417.1

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]