PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03367.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 307aa    MW: 33765.9 Da    PI: 6.9153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03367.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.95.1e-15102153155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  Pahal.I03367.1 102 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 153
                     79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-14100157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.25E-15100157No hitNo description
PROSITE profilePS5088816.412101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-18101171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-12102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MALLDAVVYP QPQGHFGYGH RDASYGLSWS SDATGFGEWD PFLLASLVQN AEEWGEELGS  60
KKASLEHDAA PSAVEWPSPV TTTKRKRRRP KVVKNEKEVE SQRMTHIAVE RNRRRQMNEY  120
LAVLRSLMPP SYAQRGDQAS IVGGAINYVR ELEQLLQSLE VQRSLKEHNP NLSNPFTGFF  180
RFPQYSATSA CHCHGGAGKH TNKEEMPDRS PQSPSVAADI EASMVEGHAS VKVQAPRRPR  240
QLLRLADGLQ QLGLTTLHLN VSTAGTTVMY SFSLKVEDEC RLSSVEEIAA AVHEILGGVQ  300
EGAGFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388KRKRRR
28488RKRRR
3102113RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797243.10.0transcription factor bHLH94-like
SwissprotQ9C7T42e-68BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2S3IMA40.0A0A2S3IMA4_9POAL; Uncharacterized protein
STRINGPavir.Ib02778.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]