PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03350.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 340aa    MW: 37602.7 Da    PI: 4.8282
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03350.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.93e-172213110128
             NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlskkgelvglk 103
                     +deelv ++L+++ ++++l+  +v+  +d   v+P+ +        + wy   + d++ + + +++ r++k+gyWk+  +  +v + +   +g+k
  Pahal.I03350.5  22 SDEELV-RFLAERKAEDPLPQ-DVLVGLDFSLVDPRIFT------VDLWYLCWSDDQQPNnSAENSIRKAKNGYWKHVESC-KVPT-SIGIMGMK 106
                     79****.99999999999999.99************996......34576444444333314556678999*****98775.5555.5778**** PP

             NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                      +L fy+g+ap g++t Wvmhey++
  Pahal.I03350.5 107 IILQFYEGHAPCGKRTGWVMHEYQV 131
                     ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-2212141IPR003441NAC domain
PROSITE profilePS5100523.10713159IPR003441NAC domain
PfamPF023657.4E-1222131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MCPPNPELKL AALNISIRDS WSDEELVRFL AERKAEDPLP QDVLVGLDFS LVDPRIFTVD  60
LWYLCWSDDQ QPNNSAENSI RKAKNGYWKH VESCKVPTSI GIMGMKIILQ FYEGHAPCGK  120
RTGWVMHEYQ VEQNDEANLP QVTADANEED VCSSKVQFEQ KPLSALDDID VIATGDYIEL  180
NDLLTSEASA STSENSSKRS MVSEDYFDSD AFLREILKGS NTTDGLNQDH KFSIAAPTKS  240
ANVVLSPSEQ GLVQFHDNNG MVPGTSHQKP VPEGDRGEHS RQGFQQQGPS MSSYFPSSHV  300
KPSHSNSSSS SQSSMKSHKE QSTSKFGMIG KKYCCFGSF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797458.10.0NAC domain-containing protein 40-like isoform X5
TrEMBLA0A2S3IMW50.0A0A2S3IMW5_9POAL; Uncharacterized protein
STRINGPavir.Ib03017.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.16e-14NAC domain containing protein 102