PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 783aa    MW: 86407.8 Da    PI: 6.6192
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3759e-24147248199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+e+       +++   +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + +
  Pahal.I03320.1 147 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQHP--PNQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGE 237
                     99*****************************65444..4559************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+v+r+
  Pahal.I03320.1 238 NGELRVGVRRA 248
                     999*****985 PP

2Auxin_resp110.22.1e-36273355183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+s+F+++Y+Pr+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e++++Gt+vg+ ++dp+ W +SkWrsLk
  Pahal.I03320.1 273 AWHAVNTGSMFTIYYKPRTSPAEFVVSRDRYYESLKRNYSIGMRFKMRFEGEEAAEQKFTGTIVGIGASDPSGWADSKWRSLK 355
                     89*******************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.62E-41143276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-40143262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-21145247No hitNo description
PfamPF023621.7E-21147248IPR003340B3 DNA binding domain
SMARTSM010199.0E-23147249IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702147249IPR003340B3 DNA binding domain
PfamPF065073.2E-33273355IPR010525Auxin response factor
SuperFamilySSF542772.01E-11651733No hitNo description
PROSITE profilePS5174521.472654736IPR000270PB1 domain
PfamPF023093.7E-7701739IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MAAAAAGGGG GGGGPEAGGG GGGGKDALFV ELWKACAGPL SSVPPLGEKV YYFPQGHIEQ  60
VEASTNQLAE QQGTPLYNLP WKIPCKLMNI ELKAEPDTDE VYAQLTLLPD KKRDENTTTT  120
VESDDPEEEV VPNALPATNE QLRIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMTQ  180
HPPNQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE  240
LRVGVRRALR HQTTIPSSVI SSHSMHLGVL ATAWHAVNTG SMFTIYYKPR TSPAEFVVSR  300
DRYYESLKRN YSIGMRFKMR FEGEEAAEQK FTGTIVGIGA SDPSGWADSK WRSLKVRWDE  360
ASSIPRPERV SAWQIEPAVS PSPVNPLPPR FKRSRSNVNA SPSIMSNVTR EVASKVMPDS  420
QQNSLPRAVH SQGRTHLTSR YRDSSDLKSA QDLTKWSKGM EQERNNISAQ TKLSLECWTQ  480
TRRPEGYNQP LSAFQQLQDA QNPLCSFPSQ ISGNCSRTWD AVDAHYPVQQ ANHNMLPGTW  540
SLMPHNNGFR MDQQMNLSMP GAPHPQRAEI AKFSGKSAFT PLQGHGIDQC SSDWFGHIKP  600
QPLVIENDGQ KTKGTSFKLF GIPFGSLEKS EPLVSPPSVA YDGKQTSPSE RNQLHIIEVH  660
KQGSALGRSI DLTKFNCYDE LIAELDQMFD FDGELSSPQK NWLVVYTDNE GDMMLVGDDP  720
WNEFCNMVHK ISIYTREEVE KMNPGALNSR SEDSLPDSLG SGLGSKEASG GPSTSSLNSE  780
NC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-167173778354Auxin response factor 1
4ldw_A1e-167173778354Auxin response factor 1
4ldw_B1e-167173778354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0665440.0BT066544.1 Zea mays full-length cDNA clone ZM_BFb0026K11 mRNA, complete cds.
GenBankJX4285050.0JX428505.1 Zea mays subsp. mays clone pUT3103 ARF28 ARF type transcription factor mRNA, partial cds.
GenBankKJ7268060.0KJ726806.1 Zea mays clone pUT3124 ARF transcription factor (ARF28) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806224.10.0auxin response factor 24-like
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLA0A2S3HDY20.0A0A2S3HDY2_9POAL; Auxin response factor
STRINGPavir.Cb00753.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]