PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I03320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 783aa MW: 86407.8 Da PI: 6.6192 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75 | 9e-24 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+e+ +++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + + Pahal.I03320.1 147 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQHP--PNQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGE 237 99*****************************65444..4559************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ Pahal.I03320.1 238 NGELRVGVRRA 248 999*****985 PP | |||||||
2 | Auxin_resp | 110.2 | 2.1e-36 | 273 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+s+F+++Y+Pr+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e++++Gt+vg+ ++dp+ W +SkWrsLk Pahal.I03320.1 273 AWHAVNTGSMFTIYYKPRTSPAEFVVSRDRYYESLKRNYSIGMRFKMRFEGEEAAEQKFTGTIVGIGASDPSGWADSKWRSLK 355 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.62E-41 | 143 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-40 | 143 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-21 | 145 | 247 | No hit | No description |
Pfam | PF02362 | 1.7E-21 | 147 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-23 | 147 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.702 | 147 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.2E-33 | 273 | 355 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.01E-11 | 651 | 733 | No hit | No description |
PROSITE profile | PS51745 | 21.472 | 654 | 736 | IPR000270 | PB1 domain |
Pfam | PF02309 | 3.7E-7 | 701 | 739 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 783 aa Download sequence Send to blast |
MAAAAAGGGG GGGGPEAGGG GGGGKDALFV ELWKACAGPL SSVPPLGEKV YYFPQGHIEQ 60 VEASTNQLAE QQGTPLYNLP WKIPCKLMNI ELKAEPDTDE VYAQLTLLPD KKRDENTTTT 120 VESDDPEEEV VPNALPATNE QLRIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMTQ 180 HPPNQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE 240 LRVGVRRALR HQTTIPSSVI SSHSMHLGVL ATAWHAVNTG SMFTIYYKPR TSPAEFVVSR 300 DRYYESLKRN YSIGMRFKMR FEGEEAAEQK FTGTIVGIGA SDPSGWADSK WRSLKVRWDE 360 ASSIPRPERV SAWQIEPAVS PSPVNPLPPR FKRSRSNVNA SPSIMSNVTR EVASKVMPDS 420 QQNSLPRAVH SQGRTHLTSR YRDSSDLKSA QDLTKWSKGM EQERNNISAQ TKLSLECWTQ 480 TRRPEGYNQP LSAFQQLQDA QNPLCSFPSQ ISGNCSRTWD AVDAHYPVQQ ANHNMLPGTW 540 SLMPHNNGFR MDQQMNLSMP GAPHPQRAEI AKFSGKSAFT PLQGHGIDQC SSDWFGHIKP 600 QPLVIENDGQ KTKGTSFKLF GIPFGSLEKS EPLVSPPSVA YDGKQTSPSE RNQLHIIEVH 660 KQGSALGRSI DLTKFNCYDE LIAELDQMFD FDGELSSPQK NWLVVYTDNE GDMMLVGDDP 720 WNEFCNMVHK ISIYTREEVE KMNPGALNSR SEDSLPDSLG SGLGSKEASG GPSTSSLNSE 780 NC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-167 | 17 | 377 | 8 | 354 | Auxin response factor 1 |
4ldw_A | 1e-167 | 17 | 377 | 8 | 354 | Auxin response factor 1 |
4ldw_B | 1e-167 | 17 | 377 | 8 | 354 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066544 | 0.0 | BT066544.1 Zea mays full-length cDNA clone ZM_BFb0026K11 mRNA, complete cds. | |||
GenBank | JX428505 | 0.0 | JX428505.1 Zea mays subsp. mays clone pUT3103 ARF28 ARF type transcription factor mRNA, partial cds. | |||
GenBank | KJ726806 | 0.0 | KJ726806.1 Zea mays clone pUT3124 ARF transcription factor (ARF28) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806224.1 | 0.0 | auxin response factor 24-like | ||||
Swissprot | Q2QQX6 | 0.0 | ARFX_ORYSJ; Auxin response factor 24 | ||||
TrEMBL | A0A2S3HDY2 | 0.0 | A0A2S3HDY2_9POAL; Auxin response factor | ||||
STRING | Pavir.Cb00753.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I03320.1 |
Publications ? help Back to Top | |||
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