PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03276.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 358aa    MW: 40241.1 Da    PI: 4.6656
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03276.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.5e-34491402102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+++++ed+++++++sws+ gnsfvv+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++
  Pahal.I03276.2  49 FLTKTFDLVEDPATDTVVSWSRAGNSFVVWDPHVFADALLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKT 134
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+k 
  Pahal.I03276.2 135 IKRRKP 140
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.67E-3545138IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.3E-3845138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5945138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-184972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-188799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-18100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEPSAAAAGI VKEELLEQQP LQDGVRLGGG GGDAPRPMEG LHEVGPPPFL TKTFDLVEDP  60
ATDTVVSWSR AGNSFVVWDP HVFADALLPR LFKHSNFSSF VRQLNTYGFR KVDPDRWEFA  120
NEGFLRGQRH LLKTIKRRKP PSAVPQSHQQ QTSASCLEVG EFGFEEEIDR LKRDKNILIT  180
EVVKLRQEQQ STKDHMRAME GRLRVAEQKQ VQMMGFLARA MRNPEFFQQL VQQQDKRKEL  240
EDAISKKRRR PIDNTPFYSP GETSQSEQLD SQFMFDSGVL DVLSEPGMPE LENLAVNIQE  300
LGKGSTDGAK MDQANGQSEL NDDFWAELLI EDFGDKAGQS ELDGRPEDVE DLAQQLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-253013810129Heat shock factor protein 1
5d5v_B1e-253013810129Heat shock factor protein 1
5d5v_D1e-253013810129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137LKTIKRR
2235249KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792788.10.0heat stress transcription factor A-2c-like isoform X1
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A2S3IM310.0A0A2S3IM31_9POAL; Uncharacterized protein
STRINGPavir.Ib03391.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-111heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]