PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I03276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HSF | ||||||||
Protein Properties | Length: 366aa MW: 41091 Da PI: 4.7152 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.9 | 3.7e-34 | 49 | 140 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+++++ed+++++++sws+ gnsfvv+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll++ Pahal.I03276.1 49 FLTKTFDLVEDPATDTVVSWSRAGNSFVVWDPHVFADALLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKT 134 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr+k Pahal.I03276.1 135 IKRRKP 140 ***985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.6E-38 | 45 | 138 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.94E-35 | 45 | 138 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-59 | 45 | 138 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-18 | 49 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-31 | 49 | 138 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-18 | 87 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 88 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-18 | 100 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MEPSAAAAGI VKEELLEQQP LQDGVRLGGG GGDAPRPMEG LHEVGPPPFL TKTFDLVEDP 60 ATDTVVSWSR AGNSFVVWDP HVFADALLPR LFKHSNFSSF VRQLNTYGFR KVDPDRWEFA 120 NEGFLRGQRH LLKTIKRRKP PSAVPQSHQQ QTSASCLEVG EFGFEEEIDR LKRDKNILIT 180 EVVKLRQEQQ STKDHMRAME GRLRVAEQKQ VQMMGFLARA MRNPEFFQQL VQQQDKRKEL 240 EDAISKKRRR PIDNTPFYSP GETSQSEQLD SQFMFDSGVL DVLSEPGMPE LENLAVNIQE 300 LGKGSTDGAK MDQANGQSEL NDDFWAELLI EDFGDKAGQS ELDGRPEDVE DLAQQLGYLS 360 SSSPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-25 | 30 | 138 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-25 | 30 | 138 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-25 | 30 | 138 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 137 | LKTIKRR |
2 | 235 | 249 | KRKELEDAISKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792788.1 | 0.0 | heat stress transcription factor A-2c-like isoform X1 | ||||
Swissprot | Q338B0 | 0.0 | HFA2C_ORYSJ; Heat stress transcription factor A-2c | ||||
TrEMBL | A0A2S3IM31 | 0.0 | A0A2S3IM31_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib03391.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-114 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I03276.1 |
Publications ? help Back to Top | |||
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