PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03275.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 412aa    MW: 43957.6 Da    PI: 8.929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03275.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-0584106123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  Pahal.I03275.1  84 FVCEICNKGFQRDQNLQLHRRGH 106
                     89*******************88 PP
2zf-C2H2140.00015171193123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cgk++  +s+ k H + +
  Pahal.I03275.1 171 WRCERCGKRYAVQSDWKAHVKGC 193
                     58*****************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-883106No hitNo description
Gene3DG3DSA:3.30.160.601.3E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94984106IPR007087Zinc finger, C2H2
PfamPF121716.3E-584106IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01784106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM0035589136166IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-5159191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.49E-8166191No hitNo description
SMARTSM0035595171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MMLSDLSSDH EATGSSSHGG DIASYALSPL FLAPATSATA PPPPPPEAPR AAGAKRKRSQ  60
PGNPDPGAEV IALSPRTLVA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRSLPSA  120
AGRQGDAAAP PRKRVYVCPE PTCVHHDPAR ALGDLTGIKK HFSRKHGEKR WRCERCGKRY  180
AVQSDWKAHV KGCGTREYRC DCGILFTRKD SLLTHRAFCD ALAEESARLL AAAASNGSAI  240
TTTNSSNGNS SSDLLFSSSI ATPLFLPFPN NPPPPAAAAQ NPNAFYFLQQ EQQQLAPFLQ  300
PRMVQPSPYL DLHADAATVA TAGGGGIVAD AVNFGLAPDG SVALRGGHRR LTRDFLGVDG  360
GGQVEAELQL PLYATAVAAA VPRAASCATD LTRQCLGERL PPVNETWSHN F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-33167236372Zinc finger protein JACKDAW
5b3h_F8e-33167236372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (By similarity). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (By similarity). Seems to repress FTL11 expression (By similarity). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (By similarity). {ECO:0000250|UniProtKB:B1B534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00673SELEXTransfer from GRMZM2G011357Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795840.10.0protein indeterminate-domain 12-like
SwissprotB8BGV51e-141EHD2_ORYSI; Protein EARLY HEADING DATE 2
TrEMBLA0A2S3IMI80.0A0A2S3IMI8_9POAL; Uncharacterized protein
STRINGSi036003m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130962832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.18e-91indeterminate(ID)-domain 7