PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03137.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 339aa    MW: 38692.6 Da    PI: 6.0065
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03137.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.33.1e-27183237156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k rl Wt +LH++F+ av++L G++kA+Pk+ile+mkvk Lt+e+v+SHLQkYRl+
  Pahal.I03137.1 183 KSRLSWTMQLHRQFIAAVNSL-GADKAVPKKILEIMKVKHLTREQVASHLQKYRLH 237
                     68*******************.9*******************************97 PP
2Response_reg554.5e-19121201109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl++d + + +++++++l k  y +v+   + +ea+  +  +++++Dli++D+  p+ d l +l+e +++  ++p i+++++g+ +++ +++  G
  Pahal.I03137.1  12 VLVIDNNSSYLKVMEELLIKCSY-KVTIYNNVREAMSSIygNQQTVDLIICDLFFPTEDSLLILQEVTSKF-DIPTIIMSSNGDTSTVMKCITNG 104
                     89*********************.***************877777**********************9999.9********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a+dfl Kp  +eel +
  Pahal.I03137.1 105 ASDFLIKPPRIEELKN 120
                     ********99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-268135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-299153No hitNo description
SMARTSM004481.7E-1610122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.39211126IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-1512120IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.28E-1913126No hitNo description
PROSITE profilePS5129412.343180239IPR017930Myb domain
SuperFamilySSF466891.25E-18181240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-27182240IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-25183237IPR006447Myb domain, plants
PfamPF002499.2E-7185235IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDHELWPSGL RVLVIDNNSS YLKVMEELLI KCSYKVTIYN NVREAMSSIY GNQQTVDLII  60
CDLFFPTEDS LLILQEVTSK FDIPTIIMSS NGDTSTVMKC ITNGASDFLI KPPRIEELKN  120
IWQHVFRKQI FGAEHRKCSN AQQHVDHQLS YRAMGITEEA TATLDSEIRG NNGTVTDIRD  180
LRKSRLSWTM QLHRQFIAAV NSLGADKAVP KKILEIMKVK HLTREQVASH LQKYRLHLRN  240
STQALHKDDR PSSSGYPNNE SSILRTQLNS SSNSLYFDQD GCMEITDYSL PKDDLSSGSE  300
CILGERNNYS PECFQDFRWD SEKQGSETTT YLWNFEAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-17182239461ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797974.10.0two-component response regulator EHD1-like isoform X1
SwissprotQ7Y0W31e-140EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A2S3ILP90.0A0A2S3ILP9_9POAL; Uncharacterized protein
STRINGPavir.Ia04737.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-59response regulator 2