PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03038.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 296aa    MW: 32439.5 Da    PI: 6.7889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03038.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.71.6e-51101381129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF P+deelv++yL++kv+++++    ++ evd++  ePw+Lp  +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ v+++
  Pahal.I03038.1  10 LPPGFRFYPSDEELVCFYLRNKVANQRVAS-GTLVEVDLHAREPWELPDVAKLTAEEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRVVHEQ 103
                     79*************************888.88***************77777889*************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +++lvg++ktLvfy+grap+g+kt Wvmhe+rle
  Pahal.I03038.1 104 gTRALVGMRKTLVFYRGRAPNGQKTGWVMHEFRLE 138
                     66677***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-608156IPR003441NAC domain
PROSITE profilePS5100558.66610156IPR003441NAC domain
PfamPF023651.6E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGLREMDSAL PPGFRFYPSD EELVCFYLRN KVANQRVASG TLVEVDLHAR EPWELPDVAK  60
LTAEEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDRVV HEQGTRALVG MRKTLVFYRG  120
RAPNGQKTGW VMHEFRLETP NSTPKEDWVL CRVFNKMKPL SEGEEAAGSR IQRGHPATAT  180
GAEPSSPPAF LGSLPNPTAN PADDFYQQRQ ALSSGALLMN LAILQQGSFL DYCSPVVHHG  240
AAVGAPHNAG CGGDDAAMAM ALGHVGFEEH GMGEALEMEY AQPEGGCGYR GGLYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-5311564165NO APICAL MERISTEM PROTEIN
1ut4_B3e-5311564165NO APICAL MERISTEM PROTEIN
1ut7_A3e-5311564165NO APICAL MERISTEM PROTEIN
1ut7_B3e-5311564165NO APICAL MERISTEM PROTEIN
3swm_A4e-5311567168NAC domain-containing protein 19
3swm_B4e-5311567168NAC domain-containing protein 19
3swm_C4e-5311567168NAC domain-containing protein 19
3swm_D4e-5311567168NAC domain-containing protein 19
3swp_A4e-5311567168NAC domain-containing protein 19
3swp_B4e-5311567168NAC domain-containing protein 19
3swp_C4e-5311567168NAC domain-containing protein 19
3swp_D4e-5311567168NAC domain-containing protein 19
4dul_A3e-5311564165NAC domain-containing protein 19
4dul_B3e-5311564165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1814923e-80KC181492.1 Urochloa ruziziensis clone 214913 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796946.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8517e-61NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2S3ILI10.0A0A2S3ILI1_9POAL; Uncharacterized protein
STRINGPavir.Ib03261.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.15e-81NAC domain containing protein 74
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]