PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03031.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 281aa    MW: 30561.2 Da    PI: 6.375
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03031.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.8e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd++lv +++q+G ++W++ +r  g+ R++k+c++rw +yl
   Pahal.I03031.1 14 RGAWSPEEDQRLVAYIRQHGHPNWRALPRQAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding49.41.1e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E+ l+v+++++lG++ W++Ia+ ++ gRt++++k+ w+++
   Pahal.I03031.1  67 RGNFSADEEALIVRLHRELGNR-WSAIAAQLP-GRTDNEIKNVWHTH 111
                      89********************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.64961IPR017930Myb domain
SuperFamilySSF466891.27E-2811108IPR009057Homeodomain-like
SMARTSM007172.4E-131363IPR001005SANT/Myb domain
PfamPF002497.4E-161461IPR001005SANT/Myb domain
CDDcd001675.19E-111661No hitNo description
PROSITE profilePS5129424.58862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2565116IPR009057Homeodomain-like
SMARTSM007171.0E-1366114IPR001005SANT/Myb domain
PfamPF002492.6E-1467111IPR001005SANT/Myb domain
CDDcd001673.32E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRAPCCEKE GLRRGAWSPE EDQRLVAYIR QHGHPNWRAL PRQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SADEEALIVR LHRELGNRWS AIAAQLPGRT DNEIKNVWHT HIKKRLEDDD  120
ADGDTSAAGR PKKQKARKSK PAAPKNKKQA AAKADNSETF MTASPGLSSS VSSGVTTFST  180
AAESTAAVSS GDNAATTSAS LQPGAAKAEM EMESFSSAEF PPIDESFWSS PDVVDMGLGA  240
MDDEELGLAG PPSSATRDED MEFWLKMLLE SGDMRDLSVL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25121175109B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837681e-171BT083768.1 Zea mays full-length cDNA clone ZM_BFb0037L06 mRNA, complete cds.
GenBankKJ7268981e-171KJ726898.1 Zea mays clone pUT3443 MYB transcription factor (MYB121) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798367.10.0transcription factor MYB30-like
TrEMBLA0A2S3ILG30.0A0A2S3ILG3_9POAL; Uncharacterized protein
STRINGPavir.J09313.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-70myb domain protein 15