PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03013.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 684aa    MW: 74596 Da    PI: 7.1062
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03013.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37e-24118219199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++
  Pahal.I03013.1 118 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTE 208
                     89****************************996555555..8999*********************************************..559 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                      +el+v+++r+
  Pahal.I03013.1 209 HGELCVGIRRA 219
                     99*******97 PP
2Auxin_resp117.98.2e-39275357283
      Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a  a+++++FevvY+Pr+st+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rW+nS+Wr+L+
  Pahal.I03013.1 275 AGLAASGQPFEVVYYPRSSTPEFVVKAASVQNAMRNQWCPGMRFKMAFETEDSSRISWfMGTIASVQVADPIRWSNSPWRLLQ 357
                     667999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-36109221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-29114222IPR015300DNA-binding pseudobarrel domain
CDDcd100174.45E-21117218No hitNo description
PROSITE profilePS5086312.929118220IPR003340B3 DNA binding domain
PfamPF023624.9E-22118219IPR003340B3 DNA binding domain
SMARTSM010198.5E-22118220IPR003340B3 DNA binding domain
PfamPF065072.1E-33274357IPR010525Auxin response factor
PROSITE profilePS5174519.962588666IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MKEAGDERCL DPQLWHACAG GMVQMPPARS RVYYFPQGHA EHAHGGGAAE LAAAAGARGL  60
PPLVLCCVAG VRFLADPETD EVFAKIRLVP VPPGEPYFGD PDELGGDPAD AREKLSSFAK  120
TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGEVWKF RHIYRGTPRR  180
HLLTTGWSTF VNQKKLVAGD SIVFLRTEHG ELCVGIRRAK RVSCGGMECM SGWNAPGYGA  240
FSAFLKDEES KMMKGPGGYM RGKGKVKIAD VVEAAGLAAS GQPFEVVYYP RSSTPEFVVK  300
AASVQNAMRN QWCPGMRFKM AFETEDSSRI SWFMGTIASV QVADPIRWSN SPWRLLQVTW  360
DEPDLLQNVK CVNPWLVELV SSIPPIHLGP FSPPRKKLRV PQHPDFPFDS QLLNPIFHGN  420
PLGPSNSPIC CFPDNAPAGI QVARHGQFGL PLTDHQLNKL HLGLFQGGGF NRLDAITPQS  480
RISKGFVITS APVKESVSCL LTIGTPQGTE KSDDRKKPHI MLFGKPILTE QQMNSGGSRE  540
TFSPEVTGNS SSDGNVQKTE NVSDGSGSSI CIGFPSQGRE ALDLGLEVGH CKVFMESEDV  600
GRTIDLSVFG SYEELYGQLA DMFGIEKAEI MSHLRYRDAA GAVKHTGEEP FSDFMKVARR  660
LTITEGGVGR LQKPIIEYMV ERA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-761038251392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795868.10.0auxin response factor 22-like
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLA0A2S3ILF00.0A0A2S3ILF0_9POAL; Auxin response factor
STRINGSi034525m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]